Database '3D-footprint 20210203' (DNA Binding Motifs 151-200)

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AccessionsNamesConsensusOrganismsDescription and notes
1zrd_BCatabolite gene activatorTgaGAEscherichia coli
strain K12
4 crystal structures of CAP-DNA with all base-pair substitutions at

1zre_BCatabolite gene activatorTCcCAEscherichia coli
strain K12
4 crystal structures of CAP-DNA with all base-pair substitutions at

1zrf_ACatabolite gene activatorCGnnnnnTGCGEscherichia coli
strain K12
4 crystal structures of CAP-DNA with all base-pair substitutions at

3iyd_HCatabolite gene activatorAnnnnTGTGaTEscherichia coli
strain K12
Three-dimensional EM structure of an intact activator-dependent transcription initiation complex
3n4m_ABCCatabolite gene activatorTwnnnnnnnnnnTGtGAEscherichia coli
strain K12
E. coli RNA polymerase alpha subunit C-terminal domain in complex

1lb2_ABECATABOLITE GENE ACTIVATOR PROTEINTwnnnnnnnnnntGtGAEscherichia coli
strain K12
Structure of the E. coli alpha C-terminal domain of RNA

1o3q_ACATABOLITE GENE ACTIVATOR PROTEINTGTGAEscherichia coli
strain K12
PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF

1o3r_ACATABOLITE GENE ACTIVATOR PROTEINAAntGcGAEscherichia coli
strain K12
PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF

1o3s_ACATABOLITE GENE ACTIVATOR PROTEINTCgcEscherichia coli
strain K12
PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF

1o3t_BCATABOLITE GENE ACTIVATOR PROTEINtCgCAEscherichia coli
strain K12
PROTEIN-DNA RECOGNITION AND DNA DEFORMATION REVEALED IN CRYSTAL STRUCTURES OF

1j59_BCATABOLITE GENE ACTIVATOR PROTEIN (CAP)GTCACAEscherichia coli
strain K12
CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
1nwq_ACCCAAT/enhancer binding protein alphaTTGCGCAARattus norvegicusCRYSTAL STRUCTURE OF C/EBPALPHA-DNA COMPLEX
1nwq_CCCAAT/enhancer binding protein alphaTTGCRattus norvegicusCRYSTAL STRUCTURE OF C/EBPALPHA-DNA COMPLEX
1h88_ABCCCAAT/ENHANCER BINDING PROTEIN BETAGTGGCGcAAnnnnTAACGGAHomo sapiensCRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
1h88_BCCAAT/ENHANCER BINDING PROTEIN BETArTGGCHomo sapiensCRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX1
1hjb_ACCAAT/ENHANCER BINDING PROTEIN BETAgGaAAHomo sapiensCRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER

1hjb_ABCCCAAT/ENHANCER BINDING PROTEIN BETATTTCCAAAnnnTGTGGTTGHomo sapiens
Mus musculus
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER

1hjb_DEFCCAAT/ENHANCER BINDING PROTEIN BETAAACCACAnnnTTTGGAAAHomo sapiens
Mus musculus
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN AND C/EBPBETA BZIP HOMODIMER

2e42_ABCCAAT/enhancer-binding protein betagTTGCGCAAHomo sapiensCrystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to

2e42_BCCAAT/enhancer-binding protein betagCAAHomo sapiensCrystal structure of C/EBPbeta Bzip homodimer V285A mutant bound to

2e43_ABCCAAT/enhancer-binding protein betaTTGCGcAAHomo sapiensCrystal structure of C/EBPbeta Bzip homodimer K269A mutant bound to

2e43_BCCAAT/enhancer-binding protein betagcAAHomo sapiensCrystal structure of C/EBPbeta Bzip homodimer K269A mutant bound to

6mg1_ABCCAAT/enhancer-binding protein betaATTgCGnAAtHomo sapiensC-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide

6mg2_ABCCAAT/enhancer-binding protein betaATTGCGnAATHomo sapiensC-terminal bZIP domain of human C/EBPbeta with 16bp Methylated Oligonucleotide

6mg3_ABCCAAT/enhancer-binding protein betaaTTnnnnAAtHomo sapiensV285A Mutant of the C-terminal bZIP domain of human C/EBPbeta

6gys_ACEHJLCentromere DNA-binding protein complex CBF3 subunit BCnnnnannnnnnnnngAnnTSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Cryo-EM structure of the CBF3-CEN3 complex of the budding yeast

1llm_CDchimera of Zif23-GCN4cCCACGCGtGGGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA
1llm_Dchimera of Zif23-GCN4GCGkGGGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA
1j1v_AChromosomal replication initiator protein dnaAATCCACAEscherichia coli
strain K12
Crystal structure of DnaA domainIV complexed with DnaAbox DNA
3pvp_BChromosomal replication initiator protein dnaATTATCCACAMycobacterium tuberculosis
strain ATCC 25177 / H37Ra
Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box2 DNA
3pvv_BChromosomal replication initiator protein dnaAwTGknCmCAMycobacterium tuberculosis
strain ATCC 25177 / H37Ra
Structure of Mycobacterium tuberculosis DnaA-DBD in complex with box1 DNA
3r8f_ABCDChromosomal replication initiator protein dnaAAnnAnnannaAquifex aeolicus
strain VF5
Replication initiator DnaA bound to AMPPCP and single-stranded DNA
3zhm_ACICTGraCLactococcus phage TP901-1N-terminal domain of the CI repressor from bacteriophage TP901-1 in

4h10_BCircadian locomoter output cycles protein kaputCAcgHomo sapiensIntermolecular recognition revealed by the complex structure of human CLOCK-BMAL1

1mey_CCONSENSUS ZINC FINGERGrGGCAGAAyCRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO

1mey_CFCONSENSUS ZINC FINGERGGGGCAGAACnnTGAGGCAGAACCRYSTAL STRUCTURE OF A DESIGNED ZINC FINGER PROTEIN BOUND TO

1a66_ACORE NFATC1GAGGAanaHomo sapiensSOLUTION NMR STRUCTURE OF THE CORE NFATC1/DNA COMPLEX, 18 STRUCTURES
1h9d_ACORE-BINDING FACTOR ALPHA SUBUNIT1tGCGGTtGHomo sapiensAml1/cbf-beta/dna complex
4jcx_ACsp231I C proteinCTaAGgCitrobacter sp. RFL231Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator

4jcx_ABCsp231I C proteinCTAAnTnnnnnTTAGCitrobacter sp. RFL231Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator

4jcy_ACsp231I C proteinytAAGACitrobacter sp. RFL231Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OR operator

4jcy_ABCsp231I C proteinCTAAGAnnnTnTTAGCitrobacter sp. RFL231Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OR operator

4jqd_ABCsp231I C proteinCTAAGtnnncCTTAGCitrobacter sp. RFL231Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator

4jqd_ECsp231I C proteinACTTAGCitrobacter sp. RFL231Crystal structure of the Restriction-Modification Controller Protein C.Csp231I OL operator

5zk1_ACCyclic AMP-responsive element-binding protein 1CGtCnncHomo sapiensCrystal Structure of the CRTC2(SeMet)-CREB-CRE complex
5zko_ACGHCyclic AMP-responsive element-binding protein 1GCTGACGTCAGCHomo sapiensCrystal structure of the CRTC2-CREB-CRE complex
1t2k_DCyclic-AMP-dependent transcription factor ATF-2TTGACAHomo sapiensStructure Of The DNA Binding Domains Of IRF3, ATF-2 and

1qp9_ABCYP1(HAP1-PC7) ACTIVATORY PROTEINCGCnnnTATCGCnnnTAGSaccharomyces cerevisiaeSTRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7
1qp9_BCYP1(HAP1-PC7) ACTIVATORY PROTEINATAnnnGCGSaccharomyces cerevisiaeSTRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7
1qp9_CDCYP1(HAP1-PC7) ACTIVATORY PROTEINGCGATAAnnGCGSaccharomyces cerevisiaeSTRUCTURE OF HAP1-PC7 COMPLEXED TO THE UAS OF CYC7


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