Database '3D-footprint 20210203' (DNA Binding Motifs 1451-1500)

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AccessionsNamesConsensusOrganismsDescription and notes
5w43_ABTranscriptional regulatory protein RcsBtaGGAannmTCTtAEscherichia coli
strain K12
Structure of the two-component response regulator RcsB-DNA complex
5w43_BTranscriptional regulatory protein RcsBtaAGAEscherichia coli
strain K12
Structure of the two-component response regulator RcsB-DNA complex
1b01_ABTRANSCRIPTIONAL REPRESSOR COPGcgTGCAStreptococcus agalactiaeTRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX
1b01_BTRANSCRIPTIONAL REPRESSOR COPGGTGCACGStreptococcus agalactiaeTRANSCRIPTIONAL REPRESSOR COPG/DNA COMPLEX
1ea4_DEFGTRANSCRIPTIONAL REPRESSOR COPGGtTGCAnnnnGTGCAAGStreptococcus agalactiaeTRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX
1ea4_HKLTRANSCRIPTIONAL REPRESSOR COPGyGCAtnnnGTCCAStreptococcus agalactiaeTRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX
1ea4_KTRANSCRIPTIONAL REPRESSOR COPGTGCAStreptococcus agalactiaeTRANSCRIPTIONAL REPRESSOR COPG/22bp dsDNA COMPLEX
5k5h_ATranscriptional repressor CTCFCGCCCCCTGCcGHomo sapiensHomo sapiens CCCTC-binding factor (CTCF) ZnF4-7 and DNA complex structure
5k5i_ATranscriptional repressor CTCFCCCTGcyGGHomo sapiensHomo sapiens CCCTC-binding factor (CTCF) ZnF5-8 and DNA complex structure

5k5j_ATranscriptional repressor CTCFCCCTGCTGGHomo sapiensHomo sapiens CCCTC-binding factor (CTCF) ZnF5-8 and DNA complex structure

5k5l_FTranscriptional repressor CTCFgCGgHomo sapiensHomo sapiens CCCTC-binding factor (CTCF) ZnF6-8 and H19 sequence DNA

5kkq_DTranscriptional repressor CTCFCCAGCAGGGGGCGCHomo sapiensHomo sapiens CCCTC-binding factor (CTCF) ZnF3-7 and DNA complex structure
5t00_DTranscriptional repressor CTCFAGCACCCCCTGCTGHomo sapiensHuman CTCF ZnF3-7 and methylated DNA complex
5t0u_ATranscriptional repressor CTCFCaGCAGGGGGCGcHomo sapiensCTCF ZnF2-7 and DNA complex structure
5und_ATranscriptional repressor CTCFcGCCCCCTGCTGgHomo sapiensCrystal Structure of CTCF(ZnF 4-10) With 28-mer DNA
5und_ABTranscriptional repressor CTCFCCAGCAGGGGGCGcGcCCCCTGCTGHomo sapiensCrystal Structure of CTCF(ZnF 4-10) With 28-mer DNA
5yef_BTranscriptional repressor CTCFCGCCCtCTGcnGHomo sapiensCrystal structure of CTCF ZFs2-8-Hs5-1aE
5yeg_ATranscriptional repressor CTCFCGCCCTCTGCTGGHomo sapiensCrystal structure of CTCF ZFs4-8-Hs5-1a complex
5yeh_BTranscriptional repressor CTCFCgnCCTCTAgnGHomo sapiensCrystal structure of CTCF ZFs4-8-eCBS
5yel_ATranscriptional repressor CTCFACTGgnnnnnnnnGGTACnGCAHomo sapiensCrystal structure of CTCF ZFs6-11-gb7CSE
1co0_ABTRP OPERON REPRESSORGTACCagnnnnnGAGEscherichia coli
strain K12
NMR STUDY OF TRP REPRESSOR-MTR OPERATOR DNA COMPLEX
1rcs_ABTRP REPRESSORGTACnAGnnnnCTaGTACEscherichia coli
strain K12
NMR STUDY OF TRP REPRESSOR-OPERATOR DNA COMPLEX
1rcs_BTRP REPRESSORGTACtAgEscherichia coli
strain K12
NMR STUDY OF TRP REPRESSOR-OPERATOR DNA COMPLEX
1r0o_ABUltraspiracle proteinGTCAnTGACCDrosophila melanogasterCrystal Structure of the Heterodimeric Ecdysone Receptor DNA-binding Complex
5e01_AUncharacterized HTH-type transcriptional regulator HI_0186CTCTnAHaemophilus influenzae
strain ATCC 51907 / DSM 11121 / KW20 / Rd
Crystal structure of HiNmlR, a MerR family regulator lacking the

5e01_ABUncharacterized HTH-type transcriptional regulator HI_0186AGAGnnnnCTCTHaemophilus influenzae
strain ATCC 51907 / DSM 11121 / KW20 / Rd
Crystal structure of HiNmlR, a MerR family regulator lacking the

6e33_AUncharacterized transcriptional regulatory protein C27B12.11cTTCGGACnnTCAASchizosaccharomyces pombe
Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Crystal Structure of Pho7-DNA complex
2h7h_ABViral jun transforming proteinaTGAGTCAtAvian sarcoma virus
strain 17
Crystal structure of the JUN BZIP homodimer complexed with AP-1

2h7h_BViral jun transforming proteinAGTCATAvian sarcoma virus
strain 17
Crystal structure of the JUN BZIP homodimer complexed with AP-1

1kb2_ABVitamin D3 ReceptorTnCACCnnnTTnACHomo sapiensCrystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin

1kb2_BVitamin D3 ReceptorGTTCAHomo sapiensCrystal Structure of VDR DNA-binding Domain Bound to Mouse Osteopontin

1kb4_ABVitamin D3 ReceptorGGncAnnnrGGnCHomo sapiensCrystal Structure of VDR DNA-binding Domain Bound to a Canonical

1kb4_BVitamin D3 ReceptorTGACCHomo sapiensCrystal Structure of VDR DNA-binding Domain Bound to a Canonical

1kb6_ABVitamin D3 ReceptorGGGtnnnnnrGGaCAHomo sapiensCrystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin

1kb6_BVitamin D3 ReceptoraGGaCAHomo sapiensCrystal Structure of VDR DNA-binding Domain Bound to Rat Osteocalcin

1ynw_ABVitamin D3 ReceptorTGACCnnnnTGnCCHomo sapiensCrystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid

2jp9_AWilms tumor 1GCGGGGGCGTnTgCHomo sapiensStructure of the Wilms Tumor Suppressor Protein Zinc Finger Domain

2jpa_AWilms tumor 1GCGGGGGCGTnTGHomo sapiensStructure of the Wilms Tumor Suppressor Protein Zinc Finger Domain

2prt_AWilms tumor 1rCGCCCcCgCHomo sapiensStructure of the Wilms Tumor Suppressor Protein Zinc Finger Domain

5kl2_AWilms tumor proteinaCTCCCACGCHomo sapiensWilms Tumor Protein (WT1) ZnF2-4 in complex with DNA
5kl3_AWilms tumor proteinGCGTGGGAGtHomo sapiensWilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with DNA
5kl4_DWilms tumor proteinaGCCCACGcHomo sapiensWilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with formylated

5kl5_AWilms tumor proteinGCGTGGGgtHomo sapiensWilms Tumor Protein (WT1) ZnF2-4 Q369H in complex with carboxylated

5kl6_AWilms tumor proteinGCGTGGGGGgHomo sapiensWilms Tumor Protein (WT1) Q369R ZnF2-4 in complex with DNA
5kl7_AWilms tumor proteinAGCCCACGCHomo sapiensWilms Tumor Protein (WT1) ZnF2-4Q369R in complex with carboxylated DNA
6b0o_AWilms tumor proteinGCGTGGGAGTGtHomo sapiensZinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with

6b0p_DWilms tumor proteinAkCCTCCCACGCHomo sapiensZinc finger Domain of WT1(-KTS form) with 12+1mer Oligonucleotide with

6b0q_AWilms tumor proteinGCGTGGGaGtHomo sapiensZinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with

6b0r_DWilms tumor proteinGCGTGGGAGGGttHomo sapiensZinc finger Domain of WT1(-KTS form) with M342R Mutation and

6blw_AWilms tumor proteinGGGaGGGntHomo sapiensZinc finger Domain of WT1(+KTS form) with M342R Mutation and



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