Database '3D-footprint 20210203' (DNA Binding Motifs 101-150)

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AccessionsNamesConsensusOrganismsDescription and notes
5yzy_CB3 domain-containing transcription repressor VAL1cATGCaArabidopsis thalianaAtVAL1 B3 domain in complex with 13bp-DNA
5yzz_CB3 domain-containing transcription repressor VAL1CATGCaArabidopsis thalianaAtVAL1 B3 domain in complex with 13bp-DNA
5z00_KB3 domain-containing transcription repressor VAL1gCATgArabidopsis thalianaAtVAL1 B3 domain in complex with 15bp-DNA
6fas_BB3 domain-containing transcription repressor VAL1CATgCArabidopsis thalianaCrystal structure of VAL1 B3 domain in complex with cognate

6j9a_AB3 domain-containing transcription repressor VAL1CATGCaArabidopsis thalianaCrystal structure of Arabidopsis thaliana VAL1 in complex with FLC

3d70_ABMR promoter DNACccTBacillus subtilis
strain 168
Crystal structure of E253A mutant of BMRR bound to 22-bp

6f58_ABBrachyury proteinTnnnCAccnAnGTGnnnAHomo sapiensCrystal structure of human Brachyury (T) in complex with DNA
6f59_ABBrachyury proteinTnnnCACcnangTGnnnAHomo sapiensCrystal structure of human Brachyury (T) G177D variant in complex

6f59_BBrachyury proteintnnnCAcHomo sapiensCrystal structure of human Brachyury (T) G177D variant in complex

2c9l_YZBZLF1 TRANS-ACTIVATOR PROTEINTgACTcAEpstein-Barr virus (strain B95-8) (HHV-4)
Human herpesvirus 4
Structure of the Epstein-Barr virus ZEBRA protein
2c9l_ZBZLF1 TRANS-ACTIVATOR PROTEINTgACtEpstein-Barr virus (strain B95-8) (HHV-4)
Human herpesvirus 4
Structure of the Epstein-Barr virus ZEBRA protein
2c9n_YBZLF1 TRANS-ACTIVATOR PROTEINacTcAEpstein-Barr virus (strain B95-8) (HHV-4)
Human herpesvirus 4
Structure of the Epstein-Barr virus ZEBRA protein at approximately 3.

2c9n_YZBZLF1 TRANS-ACTIVATOR PROTEINTGAGTCAEpstein-Barr virus (strain B95-8) (HHV-4)
Human herpesvirus 4
Structure of the Epstein-Barr virus ZEBRA protein at approximately 3.

1k78_BIC-ets-1 ProteintGGnnnnnnnntCCGMus musculus
Homo sapiens
Pax5(1-149)+Ets-1(331-440)+DNA
1k79_DC-ets-1 proteinCGGAAAnGTMus musculusEts-1(331-440)+GGAA duplex
1k7a_DC-ets-1 ProteinCnTCTCCGMus musculusEts-1(331-440)+GGAG duplex
1mdm_BC-ETS-1 PROTEINCGGAnaMus musculusINHIBITED FRAGMENT OF ETS-1 AND PAIRED DOMAIN OF PAX5 BOUND

2nny_ABC-ets-1 proteinAGGAAGnnCTTCCTHomo sapiensCrystal structure of the Ets1 dimer DNA complex.
2nny_BC-ets-1 proteinCTTCCTHomo sapiensCrystal structure of the Ets1 dimer DNA complex.
1gji_AC-REL PROTO-ONCOGENE PROTEINyTCCmGallus gallusCrystal structure of c-Rel bound to DNA
1gji_ABC-REL PROTO-ONCOGENE PROTEINGGATnTTCGallus gallusCrystal structure of c-Rel bound to DNA
1gtw_ABCAAT/ENHANCER BINDING PROTEIN BETAgTGGCGyAAkHomo sapienscrystal structure of C/EBPbeta bZip homodimer bound to a DNA

1gtw_BCAAT/ENHANCER BINDING PROTEIN BETAgTGGCHomo sapienscrystal structure of C/EBPbeta bZip homodimer bound to a DNA

1gu4_ABCAAT/ENHANCER BINDING PROTEIN BETATTrCGCAAHomo sapiensCrystal structure of C/EBPBETA BZIP homodimer bound to a high

1gu4_BCAAT/ENHANCER BINDING PROTEIN BETATTGcHomo sapiensCrystal structure of C/EBPBETA BZIP homodimer bound to a high

1gu5_ABCAAT/ENHANCER BINDING PROTEIN BETArTTGncCAAHomo sapiensCrystal structure of C/EBPBETA BZIP homodimer bound to a DNA

1gu5_BCAAT/ENHANCER BINDING PROTEIN BETAcAAcHomo sapiensCrystal structure of C/EBPBETA BZIP homodimer bound to a DNA

1h89_ACAAT/ENHANCER BINDING PROTEIN BETATTGCgHomo sapiensCRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
1h89_ABCCAAT/ENHANCER BINDING PROTEIN BETATGGCGCAAnnnntAACGGaHomo sapiensCRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
1h8a_ABCCAAT/ENHANCER BINDING PROTEIN BETATCCGTTAnnnGTTGCGCCACHomo sapiensCRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX3
1io4_ABCCAAT/ENHANCER BINDING PROTEIN BETATTTCCAAAnnnTGTGGTHomo sapiens
Mus musculus
CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND

1io4_BCAAT/ENHANCER BINDING PROTEIN BETAtcnaAaHomo sapiensCRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND

6jgw_ABCadRCnnTnTnGTnGCTnnAnnGPseudomonas putidaCrystal structure of the transcriptional regulator CadR from P. putida

6jgw_BCadRCnnTnTnGTPseudomonas putidaCrystal structure of the transcriptional regulator CadR from P. putida

6jgx_ABCadRCncTnnnGCnACnanAgnGPseudomonas putidaCrystal structure of the transcriptional regulator CadR from P. putida

6jgx_BCadRcncTntnGTPseudomonas putidaCrystal structure of the transcriptional regulator CadR from P. putida

6jni_EFCadRCnnTGTAGCnACTATAnnGTPseudomonas putidaCrystal structure of the transcriptional regulator CadR from P. putida

6jni_GHCadRACnnTATAGTnGCTACAnnGTPseudomonas putidaCrystal structure of the transcriptional regulator CadR from P. putida

6jni_HCadRGCTACAnnGTPseudomonas putidaCrystal structure of the transcriptional regulator CadR from P. putida

6jyw_ACadRCnCTnnnGTPseudomonas putidaCrystal structure of the transcription regulator CadR N81M mutant from

6jyw_ABCadRCncTnnnGTnGCnnnAgnGPseudomonas putidaCrystal structure of the transcription regulator CadR N81M mutant from

5ciz_AcAMP-activated global transcriptional regulator CRPTCacAEscherichia coli
strain K12
E. coli RNA polymerase alpha subunit CTD in complex with

5ciz_ABcAMP-activated global transcriptional regulator CRPTCacAEscherichia coli
strain K12
E. coli RNA polymerase alpha subunit CTD in complex with

3oqm_ACCatabolite control protein ATGTnnnCGTTatCABacillus subtilis
strain 168
structure of ccpa-hpr-ser46p-ackA2 complex
3oqm_CCatabolite control protein AGTTatCABacillus subtilis
strain 168
structure of ccpa-hpr-ser46p-ackA2 complex
3oqn_ACCatabolite control protein ATGTaaGCGntnACABacillus subtilis
strain 168
Structure of ccpa-hpr-ser46-p-gntr-down cre
3oqn_CCatabolite control protein ACGCTTTCABacillus subtilis
strain 168
Structure of ccpa-hpr-ser46-p-gntr-down cre
3oqo_ACCatabolite control protein ATGnraACGcnnaCABacillus subtilis
strain 168
Ccpa-hpr-ser46p-syn cre
3oqo_CCatabolite control protein AcGCTttCABacillus subtilis
strain 168
Ccpa-hpr-ser46p-syn cre
1zrc_BCatabolite gene activatorTGTGAEscherichia coli
strain K12
4 Crystal structures of CAP-DNA with all base-pair substitutions at



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