Database '3D-footprint 20210203' (DNA Binding Motifs 1401-1450)

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AccessionsNamesConsensusOrganismsDescription and notes
1qn7_BTRANSCRIPTION INITIATION FACTOR TFIID-1cTtATATAArabidopsis thalianaCrystal structure of the T(-27) Adenovirus major late promoter TATA

1qn8_BTRANSCRIPTION INITIATION FACTOR TFIID-1CTTTAATAArabidopsis thalianaCrystal structure of the T(-28) Adenovirus major late promoter TATA

1qn9_BTRANSCRIPTION INITIATION FACTOR TFIID-1TACAAaAGArabidopsis thalianaCrystal structure of the C(-29) Adenovirus major late promoter TATA

1qna_BTRANSCRIPTION INITIATION FACTOR TFIID-1cTtTTAAAArabidopsis thalianaCrystal structure of the T(-30) Adenovirus major late promoter TATA

1qnb_BTRANSCRIPTION INITIATION FACTOR TFIID-1AtTTATAArabidopsis thalianaCrystal structure of the T(-25) Adenovirus major late promoter TATA

1qnc_BTRANSCRIPTION INITIATION FACTOR TFIID-1sTkTTATTArabidopsis thalianaCrystal structure of the A(-31) Adenovirus major late promoter TATA

1qne_BTRANSCRIPTION INITIATION FACTOR TFIID-1cTtTTATAArabidopsis thalianaCrystal structure of the Adenovirus major late promoter TATA box

3u3w_ABTranscriptional activator PlcR proteintrTGAAnnnnTGCATaBacillus thuringiensisCrystal Structure of Bacillus thuringiensis PlcR in complex with the

3u3w_BTranscriptional activator PlcR proteinTTCayaBacillus thuringiensisCrystal Structure of Bacillus thuringiensis PlcR in complex with the

1h0m_ABTranscriptional activator protein TraRTGcnnnnnngCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)
Three-dimensional structure of the quorum sensing protein TraR bound to

1h0m_BTranscriptional activator protein TraRgCAcAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)
Three-dimensional structure of the quorum sensing protein TraR bound to

1h0m_CDTranscriptional activator protein TraRTGcdvvbntgCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)
Three-dimensional structure of the quorum sensing protein TraR bound to

1l3l_ATranscriptional activator protein traRtkTGCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)
Crystal structure of a bacterial quorum-sensing transcription factor complexed with

1l3l_ACTranscriptional activator protein traRTtTGCAnnnnnGCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)
Crystal structure of a bacterial quorum-sensing transcription factor complexed with

1l3l_BDTranscriptional activator protein traRGTGCAnnnnTGCAAgrobacterium tumefaciens
Rhizobium radiobacter (Agrobacterium tumefaciens)
Crystal structure of a bacterial quorum-sensing transcription factor complexed with

5nnx_ATranscriptional enhancer factor TEF-1gGAATkHomo sapiensTEAD1 bound to DNA
5gzb_ATranscriptional enhancer factor TEF-3ATTCCtCHomo sapiensCrystal Structure of Transcription Factor TEAD4 in Complex with M-CAT

5no6_NTranscriptional enhancer factor TEF-3TnnnntATTCCHomo sapiensTEAD4-HOXB13 complex bound to DNA
5jub_ABTranscriptional regulatorTGACAnnnnTGTCTstrain ATCC BAA-491 / LMD-9
Streptococcus thermophilus
Crystal structure of ComR from S.thermophilus in complex with DNA

5jub_BTranscriptional regulatorTGTCAstrain ATCC BAA-491 / LMD-9
Streptococcus thermophilus
Crystal structure of ComR from S.thermophilus in complex with DNA

6w1a_ATranscriptional regulatorCcCaStreptococcus dysgalactiaeCrystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2 bound

6w1a_ABTranscriptional regulatorCcCasywdcACaStreptococcus dysgalactiaeCrystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2 bound

4fth_ATranscriptional regulator (NtrC family)TGCAAAAquifex aeolicus
strain VF5
Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA
4fth_ABTranscriptional regulator (NtrC family)TTGCAnnnnTGCAAAAquifex aeolicus
strain VF5
Crystal Structure of NtrC4 DNA-binding domain bound to double-stranded DNA
4iri_ATranscriptional regulator ERGCGGAagHomo sapiensAuto-inhibited ERG Ets Domain-DNA Complex
5ybd_ATranscriptional regulator ERGtTCCgHomo sapiensX-ray structure of ETS domain of Ergp55 in complex with

4f6m_ATranscriptional regulator KaisotCCTGCCAHomo sapiensCrystal structure of Kaiso zinc finger DNA binding domain in

4f6n_ATranscriptional regulator KaisogannnnGngHomo sapiensCrystal structure of Kaiso zinc finger DNA binding protein in

5vmu_ATranscriptional regulator KaisotnnnnGgaHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with

5vmw_ATranscriptional regulator KaisoTCCcGcGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with

5vmx_ATranscriptional regulator KaisoGnnTCCCGCGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with

5vmy_ATranscriptional regulator KaisoTCGCGGGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with

6df5_ATranscriptional regulator KaisotGGCAGGaHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with

6df8_ATranscriptional regulator KaisoTGGCAGGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with

6dfa_ATranscriptional regulator KaisoTGGCAGGAHomo sapiensKaiso (ZBTB33) E535A zinc finger DNA binding domain in complex

6dfb_ATranscriptional regulator KaisoTCCTGCCAHomo sapiensKaiso (ZBTB33) K539A zinc finger DNA binding domain in complex

6dfc_ATranscriptional regulator KaisoTCcTGCCAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with

6v8u_ATranscriptional regulator KaisoTGGCACGAHomo sapiensKaiso (ZBTB33) zinc finger DNA binding domain in complex with

6ide_ABTranscriptional regulator LuxR familyGGGgnnnncCcCVibrio choleraeCrystal structure of the Vibrio cholera VqmA-Ligand-DNA complex provides molecular

3q5f_ATranscriptional regulator slyAAGCTAAnnRTSalmonella enterica subsp. enterica serovar Typhimurium
strain LT2 / SGSC1412 / ATCC 700720
Crystal structure of the Salmonella transcriptional regulator SlyA in complex

3q5f_ABTranscriptional regulator slyATAnntTAGCAAGCTAAnnATSalmonella enterica subsp. enterica serovar Typhimurium
strain LT2 / SGSC1412 / ATCC 700720
Crystal structure of the Salmonella transcriptional regulator SlyA in complex

4aij_ABTRANSCRIPTIONAL REGULATOR SLYATTCAAnnnnTATAstrain YPIII
Yersinia pseudotuberculosis serotype O:3
Crystal structure of RovA from Yersinia in complex with a

4aij_BTRANSCRIPTIONAL REGULATOR SLYATTCAstrain YPIII
Yersinia pseudotuberculosis serotype O:3
Crystal structure of RovA from Yersinia in complex with a

4aik_ATRANSCRIPTIONAL REGULATOR SLYATTnTATGstrain YPIII
Yersinia pseudotuberculosis serotype O:3
Crystal structure of RovA from Yersinia in complex with an

5i2d_RTranscriptional regulator, Crp familytCAcAstrain HB8 / ATCC 27634 / DSM 579
Thermus thermophilus
Crystal structure of T. thermophilus TTHB099 class II transcription activation

6c2s_ADTranscriptional regulator, MarR familyATnnTTATAnnnTATAAnnATRhodopseudomonas palustris
strain ATCC BAA-98 / CGA009
Transcriptional repressor, CouR, bound to a 23-mer DNA duplex
6c2s_CTranscriptional regulator, MarR familyATnnTTATARhodopseudomonas palustris
strain ATCC BAA-98 / CGA009
Transcriptional repressor, CouR, bound to a 23-mer DNA duplex
5vxn_ABTranscriptional regulatory protein RcsBTAAGAnnnnTCCTAEscherichia coli
strain K12
Structure of two RcsB dimers bound to two parallel DNAs.
5vxn_CDTranscriptional regulatory protein RcsBTAGGAnnnnTCTTAEscherichia coli
strain K12
Structure of two RcsB dimers bound to two parallel DNAs.
5vxn_DTranscriptional regulatory protein RcsBtAaGAEscherichia coli
strain K12
Structure of two RcsB dimers bound to two parallel DNAs.


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