Database '3D-footprint 20210203' (DNA Binding Motifs 1351-1400)

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AccessionsNamesConsensusOrganismsDescription and notes
1tf3_ATRANSCRIPTION FACTOR IIIATGkATGGGAGAmXenopus laevisTFIIIA FINGER 1-3 BOUND TO DNA, NMR, 22 STRUCTURES
6cnc_RTranscription factor IIIB 70 kDa subunit,TATA-box-binding protein,Transcription factor IIIB 70

AnnnnnnnnnnnnnACTAATAnnTGTSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Yeast RNA polymerase III open complex
5vpe_DTranscription factor jun-DAnTCACHomo sapiensTranscription factor FosB/JunD bZIP domain in complex with cognate DNA,

5vpf_BTranscription factor jun-DACTCAHomo sapiensTranscription factor FosB/JunD bZIP domain in complex with cognate DNA,

4eot_ATranscription factor MafATGCtgaGTHomo sapiensCrystal structure of the MafA homodimer bound to the consensus

4eot_ABTranscription factor MafAtGCnnACTnnGCaHomo sapiensCrystal structure of the MafA homodimer bound to the consensus

2wt7_BTRANSCRIPTION FACTOR MAFBAGTnaGCaMus musculusCrystal structure of the bZIP heterodimeric complex MafB:cFos bound to

2wty_ABTRANSCRIPTION FACTOR MAFBTGCnnACTnAGCAMus musculusCrystal structure of the homodimeric MafB in complex with the

2wty_BTRANSCRIPTION FACTOR MAFBTGCnnACMus musculusCrystal structure of the homodimeric MafB in complex with the

4auw_ABTRANSCRIPTION FACTOR MAFBTGCtnACGTnarCAMus musculusCRYSTAL STRUCTURE OF THE BZIP HOMODIMERIC MAFB IN COMPLEX WITH

4auw_ETRANSCRIPTION FACTOR MAFBTGCtnnCgMus musculusCRYSTAL STRUCTURE OF THE BZIP HOMODIMERIC MAFB IN COMPLEX WITH

4auw_EFTRANSCRIPTION FACTOR MAFBTGCnAACGnTTGCAMus musculusCRYSTAL STRUCTURE OF THE BZIP HOMODIMERIC MAFB IN COMPLEX WITH

3a5t_ABTranscription factor MafGTGAtAAGTTaGCAMus musculusCrystal structure of MafG-DNA complex
3a5t_BTranscription factor MafGtGCtkactMus musculusCrystal structure of MafG-DNA complex
5gnj_ABTranscription factor MYC2taCACGTGArabidopsis thalianaStructure of a transcription factor and DNA complex
5gnj_GINTranscription factor MYC2CaCGtGtArabidopsis thalianaStructure of a transcription factor and DNA complex
5gnj_ITranscription factor MYC2ACACGArabidopsis thalianaStructure of a transcription factor and DNA complex
1o4x_ABtranscription factor Oct-1CATTnGCATGACAAAGHomo sapiensTERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1

2i9t_ABTranscription factor p65GGaanTtCCCMus musculusStructure of NF-kB p65-p50 heterodimer bound to PRDII element of

3gut_ABDTranscription factor p65GTCCCnnnnGGAAnGTCCHomo sapiensCrystal structure of a higher-order complex of p50:RelA bound to

3gut_CFTranscription factor p65GTCCAnTGGAAHomo sapiensCrystal structure of a higher-order complex of p50:RelA bound to

3gut_ETranscription factor p65TTCCHomo sapiensCrystal structure of a higher-order complex of p50:RelA bound to

3gut_EGHTranscription factor p65TTCCgnnnGGGACnTTCCaHomo sapiensCrystal structure of a higher-order complex of p50:RelA bound to

5u01_ABCDTranscription factor p65CGGAAnTTCCCGGGAAnTTCCGCMus musculusCooperative DNA binding by two RelA dimers
5u01_CTranscription factor p65cGGGAaMus musculusCooperative DNA binding by two RelA dimers
2o61_ATranscription factor p65/Interferon regulatory factor 7/Interferon regulatory factor 3 fusion

GGAGAnnTTAAnnnnnnnnnTTCCTCHomo sapiensCrystal Structure of NFkB, IRF7, IRF3 bound to the interferon-b

2o61_ABTranscription factor p65/Interferon regulatory factor 7/Interferon regulatory factor 3 fusion

GGAGAnnTTAAnnTGGGAAnTTCCTCHomo sapiensCrystal Structure of NFkB, IRF7, IRF3 bound to the interferon-b

1gd2_EFTRANSCRIPTION FACTOR PAP1GGTTACGTAACCSchizosaccharomyces pombe
Schizosaccharomyces pombe (strain 972 / ATCC 24843)
CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
1gd2_GTRANSCRIPTION FACTOR PAP1GGTTACGSchizosaccharomyces pombe
Schizosaccharomyces pombe (strain 972 / ATCC 24843)
CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
1gd2_GHTRANSCRIPTION FACTOR PAP1GGTTACGTAACCSchizosaccharomyces pombe
Schizosaccharomyces pombe (strain 972 / ATCC 24843)
CRYSTAL STRUCTURE OF BZIP TRANSCRIPTION FACTOR PAP1 BOUND TO DNA
6o19_ATranscription factor Pho7TCGGnnnnTAAASchizosaccharomyces pombe
Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Crystal Structure of Pho7 complex with pho1 promoter site 2
2v2t_ATRANSCRIPTION FACTOR RELBGGgAntMus musculusX-ray structure of a NF-kB p50-RelB-DNA complex
2v2t_ABTRANSCRIPTION FACTOR RELBGGkAAnTcCCMus musculusX-ray structure of a NF-kB p50-RelB-DNA complex
6t78_ATranscription factor SOX-11TaAATTgTHomo sapiensStructure of human Sox11 transcription factor in complex with a

6t78_ABTranscription factor SOX-11ACAATAAATTGTHomo sapiensStructure of human Sox11 transcription factor in complex with a

3f27_DTranscription factor SOX-17ACAATaMus musculusStructure of Sox17 Bound to DNA
4y60_CTranscription factor SOX-18ACAATgMus musculusStructure of SOX18-HMG/PROX1-DNA
1gt0_DTRANSCRIPTION FACTOR SOX-2CTTTGTnngMus musculusCrystal structure of a POU/HMG/DNA ternary complex
1o4x_BTranscription factor SOX-2gCAAAGHomo sapiensTERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1

6ht5_DETranscription factor SOX-2CATTGTTATGCMus musculusOct4/Sox2:UTF1 structure
3u2b_CTranscription factor SOX-4cTaTTGTMus musculusStructure of the Sox4 HMG domain bound to DNA
4euw_ATranscription factor SOX-9TcAAAgHomo sapiensCrystal structure of a HMG domain of transcription factor SOX-9

4s2q_DTranscription factor SOX-9wACAaAgMus musculusCrystal Structure of HMG domain of the chondrogenesis master regulator,

5iyd_MTranscription initiation factor IIBTTTTnttnTTTnntTHomo sapiensHuman core-PIC in the initial transcribing state (no IIS)
1ngm_ETranscription initiation factor TFIIDTAtAAaASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal structure of a yeast Brf1-TBP-DNA ternary complex
1nh2_ACTranscription initiation factor TFIIDTAnAAaAcSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal structure of a yeast TFIIA/TBP/DNA complex
1qn3_BTRANSCRIPTION INITIATION FACTOR TFIID-1TATAAaCgArabidopsis thalianaCrystal structure of the C(-25) Adenovirus major late promoter TATA

1qn4_BTRANSCRIPTION INITIATION FACTOR TFIID-1aTtTTATAArabidopsis thalianaCrystal structure of the T(-24) Adenovirus major late promoter TATA

1qn5_BTRANSCRIPTION INITIATION FACTOR TFIID-1cTCTTATAArabidopsis thalianaCrystal structure of the G(-26) Adenovirus major late promoter TATA

1qn6_BTRANSCRIPTION INITIATION FACTOR TFIID-1TATAAtAgArabidopsis thalianaCrystal structure of the T(-26) Adenovirus major late promoter TATA



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