Database '3D-footprint 20210203' (DNA Binding Motifs 1301-1350)

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AccessionsNamesConsensusOrganismsDescription and notes
5yj3_DTelomere zinc finger-associated proteinrCCCTArHomo sapiensCrystal structure of TZAP and telomeric DNA complex
5yej_BTetR family transcriptional regulatorCTTGAACGMycobacterium smegmatis
Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Crystal structure of BioQ with its naturel double-stranded DNA operator
5yej_BCTetR family transcriptional regulatorCTTGAACGnTGTTCnnGMycobacterium smegmatis
Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Crystal structure of BioQ with its naturel double-stranded DNA operator
1a1f_ATHREE-FINGER ZIF268 PEPTIDEGCGTGGGAccMus musculusDSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)
3m9e_ABThyroid hormone receptor betaTGACCtnnnnnnrGGTCARattus norvegicusThyroid hormone beta DNA binding domain homodimer with inverted palindrome

3m9e_EThyroid hormone receptor betatGaCCRattus norvegicusThyroid hormone beta DNA binding domain homodimer with inverted palindrome

3m9e_EFThyroid hormone receptor betaTGACCynnnnnnnGGtCARattus norvegicusThyroid hormone beta DNA binding domain homodimer with inverted palindrome

4pu3_ABCDToxin-antitoxin system antidote transcriptional repressor Xre familyAGGnTnnnnnnCTnAShewanella oneidensis
strain MR-1
Shewanella oneidensis MR-1 Toxin Antitoxin System HipA, HipB and its

4pu3_CToxin-antitoxin system antidote transcriptional repressor Xre familyAncCtShewanella oneidensis
strain MR-1
Shewanella oneidensis MR-1 Toxin Antitoxin System HipA, HipB and its

4pu4_ABCDToxin-antitoxin system antidote transcriptional repressor Xre familyAGGGTTnnnTnnnTShewanella oneidensis
strain MR-1
Shewanella oneidensis MR-1 Toxin Antitoxin System HipA, HipB and its

3dfv_CDTrans-acting T-cell-specific transcription factor GATA-3TkATAannmTTATMus musculusAdjacent GATA DNA binding
3dfv_DTrans-acting T-cell-specific transcription factor GATA-3AGATAAMus musculusAdjacent GATA DNA binding
3dfx_ABTrans-acting T-cell-specific transcription factor GATA-3TTATCTCTGATTTMus musculusOpposite GATA DNA binding
3dfx_BTrans-acting T-cell-specific transcription factor GATA-3TTGATAAMus musculusOpposite GATA DNA binding
4hc7_BTrans-acting T-cell-specific transcription factor GATA-3aTCAntGATAAHomo sapiensCrystal structure of the full DNA binding domain of GATA3-complex

4hc9_ATrans-acting T-cell-specific transcription factor GATA-3TgAtHomo sapiensDNA binding by GATA transcription factor-complex 3
4hca_ATrans-acting T-cell-specific transcription factor GATA-3tTCTGATAaHomo sapiensDNA binding by GATA transcription factor-complex 1
1r8d_ABtranscription activator MtaNCnnnnACGTnGCGTnannGBacillus subtilis
strain 168
Crystal Structure of MtaN Bound to DNA
1r8d_Btranscription activator MtaNgCGTnannGBacillus subtilis
strain 168
Crystal Structure of MtaN Bound to DNA
6od3_ABHTranscription factor 4CACGTGHomo sapiensHuman TCF4 C-terminal bHLH domain in Complex with 13-bp Oligonucleotide

6od3_EFTranscription factor 4CACGTgnmHomo sapiensHuman TCF4 C-terminal bHLH domain in Complex with 13-bp Oligonucleotide

6od3_FTranscription factor 4CGTGnaHomo sapiensHuman TCF4 C-terminal bHLH domain in Complex with 13-bp Oligonucleotide

6od4_ABTranscription factor 4CACGTGHomo sapiensHuman TCF4 C-terminal bHLH domain in Complex with 11-bp Oligonucleotide

6od4_BTranscription factor 4cgTGHomo sapiensHuman TCF4 C-terminal bHLH domain in Complex with 11-bp Oligonucleotide

6od5_CDTranscription factor 4CACGTGHomo sapiensHuman TCF4 C-terminal bHLH domain in Complex with 12-bp Oligonucleotide

3tmm_ATranscription factor A, mitochondrialAGTTGGnnnnnGnCTGTHomo sapiensTFAM imposes a U-turn on mitochondrial DNA
3tq6_ABTranscription factor A, mitochondrialACAGnnAnnnnCCAACAnnnaACAGTCAnnnnCCAACHomo sapiensCrystal structure of human mitochondrial transcription factor A, TFAM or

3tq6_BTranscription factor A, mitochondrialACAGtCAnnnnCCAACHomo sapiensCrystal structure of human mitochondrial transcription factor A, TFAM or

4nnu_ABTranscription factor A, mitochondrialTCCCGnnnnnnAACTTnnnnGnTCCCnnnnnnnAACTTHomo sapiensDistinct structural features of TFAM drive mitochondrial DNA packaging versus

4nnu_BTranscription factor A, mitochondrialGnTCCCnnnnnnnAACTTHomo sapiensDistinct structural features of TFAM drive mitochondrial DNA packaging versus

4nod_ABGHTranscription factor A, mitochondrialGGTAnnnnnnnTGGnnnnnnnGGTAnnnnnnnTGGnnGnnnnGGTAnnnnnnnTGGnnnnnnnGGTAnnnnnnnTGGHomo sapiensDistinct structural features of TFAM drive mitochondrial DNA packaging versus

4nod_BTranscription factor A, mitochondrialGGTAnnnnnnnTGGHomo sapiensDistinct structural features of TFAM drive mitochondrial DNA packaging versus

6erp_ACFTranscription factor A, mitochondrialTAGTTGGnnnnnnnCTGTTnnnnnnnnnnnnCnTHomo sapiensStructure of the human mitochondrial transcription initiation complex at the

6erp_BGJTranscription factor A, mitochondrialAGTTGGnnnnnnnCTGTTnnnnnnnnnnnnCnTGHomo sapiensStructure of the human mitochondrial transcription initiation complex at the

6erq_ACFTranscription factor A, mitochondrialGGTnTnnnnnnnnnnGGGTAnnnnnnnAGCAGCGHomo sapiensStructure of the human mitochondrial transcription initiation complex at the

6erq_BGJTranscription factor A, mitochondrialGCTGCTnnnnnnnTACCCnnnnnnnnnnnnATAGHomo sapiensStructure of the human mitochondrial transcription initiation complex at the

6hb4_ADGJTranscription factor A, mitochondrialAATTGAnnnnnnnCACAnnnnnAATTGAnnnnnnnCACAGnnnnnATTGAnnnnnnnCACAGnnnnAATTGAnnnnnnnCACAGHomo sapiensTFAM in Complex with Site-Y
6hb4_JTranscription factor A, mitochondrialAATTGAnnnnnnnnACAGHomo sapiensTFAM in Complex with Site-Y
6hc3_ADGJTranscription factor A, mitochondrialTGGTGGnnnnnnntTGTTnnnnnGGTGGnnnnnnnnTGTTHomo sapiensTFAM bound to Site-X
5t01_ABTranscription factor AP-1angAGTCAtHomo sapiensHuman c-Jun DNA binding domain homodimer in complex with methylated

5t01_BTranscription factor AP-1TgACtHomo sapiensHuman c-Jun DNA binding domain homodimer in complex with methylated

3mlp_EFTranscription factor COE1TtCCCATGGGAAnAAMus musculusEarly B-cell Factor 1 (Ebf1) bound to DNA
3mlp_FTranscription factor COE1tnCCCAnnngMus musculusEarly B-cell Factor 1 (Ebf1) bound to DNA
1dh3_ACTRANSCRIPTION FACTOR CREBTgnCgTCAMus musculusCRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS

1dh3_CTRANSCRIPTION FACTOR CREBCGnCAMus musculusCRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS

2ql2_ABTranscription factor E2-alphacCAnnTGgMus musculusCrystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1

2ql2_CDTranscription factor E2-alphaCCAGntGGMus musculusCrystal Structure of the basic-helix-loop-helix domains of the heterodimer E47/NeuroD1

4yo2_ATranscription factor E2F8TGGCGGRrHomo sapiensStructure of E2F8, an atypical member of E2F family of

4mhg_ATranscription factor ETV6anCCGGAAMus musculusCrystal structure of ETV6 bound to a specific DNA sequence
1bvo_ATRANSCRIPTION FACTOR GAMBIF1TGGGAAnopheles funestus
Anopheles gambiae
DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA


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