Database '3D-footprint 20210203' (DNA Binding Motifs 1251-1300)

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AccessionsNamesConsensusOrganismsDescription and notes
4y5w_BDSignal transducer and activator of transcription 6TTCnnggHomo sapiensTranscription factor-DNA complex
5d39_ACSignal transducer and activator of transcription 6TTCCnGGAAHomo sapiensTranscription factor-DNA complex
5d39_BDSignal transducer and activator of transcription 6TtcCtGgaaHomo sapiensTranscription factor-DNA complex
5d39_DSignal transducer and activator of transcription 6TtcCHomo sapiensTranscription factor-DNA complex
1ozj_ABSMAD 3GtCTAGaCAHomo sapiensCrystal structure of Smad3-MH1 bound to DNA at 2.4 A

1ozj_BSMAD 3AGaCHomo sapiensCrystal structure of Smad3-MH1 bound to DNA at 2.4 A

3kmp_ASMAD1-MH1TGtCTaMus musculusCrystal Structure of SMAD1-MH1/DNA complex
3kmp_ABSMAD1-MH1TGTCTAGaCTMus musculusCrystal Structure of SMAD1-MH1/DNA complex
1mhd_ABSMAD3TGTCTATACTHomo sapiensCRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA
1mhd_BSMAD3TAGACTHomo sapiensCRYSTAL STRUCTURE OF A SMAD MH1 DOMAIN BOUND TO DNA
1lq1_ABStage 0 sporulation protein ACAAnnnnCGACABacillus subtilis
strain 168
DNA Complexed Structure of the Key Transcription Factor Initiating Development

1lq1_DStage 0 sporulation protein AtGtCGBacillus subtilis
strain 168
DNA Complexed Structure of the Key Transcription Factor Initiating Development

1lo1_ASteroid hormone receptor ERR2tnACCTnGAgHomo sapiensESTROGEN RELATED RECEPTOR 2 DNA BINDING DOMAIN IN COMPLEX WITH

2ff0_ASteroidogenic factor 1TGgCCCtGAMus musculusSolution Structure of Steroidogenic Factor 1 DNA Binding Domain Bound

5e24_ESuppressor of hairless proteintCCCAcDrosophila melanogasterStructure of the Su(H)-Hairless-DNA Repressor Complex
4a04_ABT-BOX TRANSCRIPTION FACTOR TBX1TnnnCACcnaGgTGnnnAHomo sapiensStructure of the DNA-bound T-box domain of human TBX1, a

1h6f_ABT-BOX TRANSCRIPTION FACTOR TBX3TnnnCACctAGgTGnnnAHomo sapiensHuman TBX3, a transcription factor responsible for ulnar-mammary syndrome, bound

1h6f_BT-BOX TRANSCRIPTION FACTOR TBX3gTGnnnAHomo sapiensHuman TBX3, a transcription factor responsible for ulnar-mammary syndrome, bound

4s0h_ABT-box transcription factor TBX5CacnnnnGAAGnGHomo sapiensTBX5 DB, NKX2.5 HD, ANF DNA Complex
4s0h_EFT-box transcription factor TBX5CACnnnnnAAGTGHomo sapiensTBX5 DB, NKX2.5 HD, ANF DNA Complex
2ypa_ABT-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1cCAnnTGtHomo sapiensStructure of the SCL:E47:LMO2:LDB1 complex bound to DNA
2ypb_ABT-CELL ACUTE LYMPHOCYTIC LEUKEMIA PROTEIN 1GnaCAnaTGHomo sapiensStructure of the SCL:E47 complex bound to DNA
1vto_BTATA BINDING PROTEINTATAAaAgArabidopsis thaliana1.9 A RESOLUTION REFINED STRUCTURE OF TBP RECOGNIZING THE MINOR

1vtl_ETATA BINDING PROTEIN (TBP)TATAAaAgArabidopsis thalianaCO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A

1c9b_QRTATA BOX BINDING PROTEINtATAAaAgHomo sapiensCRYSTAL STRUCTURE OF A HUMAN TBP CORE DOMAIN-HUMAN TFIIB CORE

1nvp_ACTATA box binding proteinCTTTTATAnnCCHomo sapiensHUMAN TFIIA/TBP/DNA COMPLEX
1g2d_FTATA BOX ZINC FINGER PROTEINCGCTATAAAAmMus musculusSTRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2)
1g2f_FTATA BOX ZINC FINGER PROTEINcTTtTATaGCgMus musculusSTRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6)
1d3u_ATATA-BINDING PROTEINTTTAAATAPyrococcus woeseiTATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI
1d3u_ABTATA-BINDING PROTEINTATTTAAAnnTTACTPyrococcus woeseiTATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/BRE+TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI
1rm1_ATATA-box binding proteingTtTTATASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
1rm1_ACTATA-box binding proteingTtTTATASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
4roc_ABTATA-box-binding proteinGGnnTTAAAATAnGTHomo sapiensHuman TFIIB-related factor 2 (Brf2) and TBP bound to U6#2

4roc_BTATA-box-binding proteinTTAAAATAHomo sapiensHuman TFIIB-related factor 2 (Brf2) and TBP bound to U6#2

4rod_ABTATA-box-binding proteinGAnnCTTATATAnCTGHomo sapiensHuman TFIIB-related factor 2 (Brf2) and TBP bound to TRNAU1

4roe_ABTATA-box-binding proteinGAnnCTTATAAGnncHomo sapiensHuman TFIIB-related factor 2 (Brf2) and TBP bound to RPPH1

5fur_ACGITATA-BOX-BINDING PROTEINCTTTTATAHomo sapiensStructure of human TFIID-IIA bound to core promoter DNA
5iyd_PTATA-box-binding proteinTTTTATAHomo sapiensHuman core-PIC in the initial transcribing state (no IIS)
5n9g_ABCTATA-box-binding proteingnnnnannTATTTTAAnnCHomo sapiensTFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1-
5n9g_FGHTATA-box-binding proteingnnTTAAAATAnntHomo sapiensTFIIIB -TBP/Brf2/DNA and SANT domain of Bdp1-
6f41_UTATA-box-binding proteinAntTnTaSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
RNA Polymerase III initially transcribing complex
6mzm_ABTWTATA-box-binding proteinTATAAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCnnnCnGAHomo sapiensHuman TFIID bound to promoter DNA and TFIIA
6njq_ATATA-box-binding protein 1GTTTATAArabidopsis thalianaStructure of TBP-Hoogsteen containing DNA complex
6ueo_GTATA-box-binding protein 1TATAAAAGArabidopsis thalianaStructure of A. thaliana TBP-AC mismatch DNA site
6uep_BTATA-box-binding protein 1cCtTTATAArabidopsis thalianaStructure of A. thaliana TBP bound to a DNA site

6ueq_BTATA-box-binding protein 1CTtTTATaArabidopsis thalianaStructure of TBP bound to C-C mismatch containing TATA site
6uer_ATATA-box-binding protein 1cCtTTATAArabidopsis thalianaCrystal form 2: Structure of TBP bound to C-C mismatch

4kdp_ABTcaR transcription regulatorCGCAGcGnnnAStaphylococcus epidermidis
strain ATCC 12228 / FDA PCI 1200
TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism

4kdp_BTcaR transcription regulatorCncAgStaphylococcus epidermidis
strain ATCC 12228 / FDA PCI 1200
TcaR-ssDNA complex crystal structure reveals the novel ssDNA binding mechanism

5yj3_CDTelomere zinc finger-associated proteintTAGGGtTAGHomo sapiensCrystal structure of TZAP and telomeric DNA complex


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