Database '3D-footprint 2022-04-03' (DNA Binding Motifs 1101-1150)

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AccessionsNamesConsensusOrganismsDescription and notes
2ayg_ABRegulatory protein E2CAACCGnnnnCGGTTGHuman papillomavirus type 6aCrystal structure of HPV6a E2 DNA binding domain bound to

3coq_ABRegulatory protein GAL4cGGnnnnnnnnnnnCCgSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Structural Basis for Dimerization in DNA Recognition by Gal4
2er8_ABRegulatory protein LEU3cCGGnnCCgSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of Leu3 DNA-binding domain complexed with a 12mer

2er8_CRegulatory protein LEU3CCGgSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of Leu3 DNA-binding domain complexed with a 12mer

2er8_CDRegulatory protein LEU3CCGGtaCCGGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of Leu3 DNA-binding domain complexed with a 12mer

2ere_ABRegulatory protein LEU3CCGgnncCGGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of a Leu3 DNA-binding domain complexed with a

2ere_BRegulatory protein LEU3cCGGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of a Leu3 DNA-binding domain complexed with a

2erg_ARegulatory protein LEU3ccGGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of Leu3 DNA-binding domain with a single H50C

2erg_ABRegulatory protein LEU3CCGgnncCGGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of Leu3 DNA-binding domain with a single H50C

2r1j_LRepressor protein C2TTAAGEnterobacteria phage P22Crystal Structure of the P22 c2 Repressor protein in complex

2r1j_LRRepressor protein C2TTAAGnnnnCTTAAEnterobacteria phage P22Crystal Structure of the P22 c2 Repressor protein in complex

3jxb_CDRepressor protein C2TTAAGnnnnCTTAAATAEnterobacteria phage P22Crystal structure of the P22 c2 repressor protein in complex

3jxb_DRepressor protein C2TTAAGnnnnnnnnnnTAEnterobacteria phage P22Crystal structure of the P22 c2 repressor protein in complex

3jxc_LRepressor protein C2TTAAGEnterobacteria phage P22Crystal structure of the P22 c2 repressor protein in complex

3jxc_LRRepressor protein C2TTAAGnnnnCTTAAEnterobacteria phage P22Crystal structure of the P22 c2 repressor protein in complex

3jxd_LRepressor protein C2TtAArEnterobacteria phage P22Crystal structure of the P22 c2 repressor protein in complex

3jxd_LRRepressor protein C2TTAAGnnnnTTTAAEnterobacteria phage P22Crystal structure of the P22 c2 repressor protein in complex

1rio_ABHRepressor protein CITAnCACCGCnAGTACTTGACEnterobacteria phage lambda
Escherichia phage lambda
Thermus aquaticus
Structure of bacteriophage lambda cI-NTD in complex with sigma-region4 of

5ed4_AResponse regulatorAGCTGTGAMycobacterium tuberculosis
strain ATCC 25618 / H37Rv
Structure of a PhoP-DNA complex
5ed4_ABResponse regulatorynCAGcwnnnTCnCAGMycobacterium tuberculosis
strain ATCC 25618 / H37Rv
Structure of a PhoP-DNA complex
5ed4_EFResponse regulatortCnCAGnnnnnTCaCAGMycobacterium tuberculosis
strain ATCC 25618 / H37Rv
Structure of a PhoP-DNA complex
4wu4_ABResponse regulator receiver domain proteinTCGTnCnnnaGnCCEnterococcus faecalis S613Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed

4wu4_BResponse regulator receiver domain proteinGwrCraEnterococcus faecalis S613Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed

4wuh_BResponse regulator receiver domain proteinTCGtnCtEnterococcus faecalis S613Crystal structure of E. faecalis DNA binding domain LiaR wild

4wul_AResponse regulator receiver domain proteinTCmtnAEnterococcus faecalis S613Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed

4wul_ABResponse regulator receiver domain proteinTCAtnAgnnTTnAGTAEnterococcus faecalis S613Crystal structure of E. faecalis DNA binding domain LiaRD191N complexed

1dsz_ABRETINOIC ACID RECEPTOR ALPHAtGACCnnTGaCCHomo sapiensSTRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH

6xwg_DRetinoic acid receptor alphaTgaACHomo sapiensCrystal Structure of the Human RXR/RAR DNA-Binding Domain Heterodimer Bound

5uan_BRetinoic acid receptor betaGGTCAHomo sapiensCrystal structure of multi-domain RAR-beta-RXR-alpha heterodimer on DNA
1r0n_ABRetinoic acid receptor RXR-alphaGGnCAnTGaCCHomo sapiens
Drosophila melanogaster
Crystal Structure of Heterodimeric Ecdsyone receptor DNA binding complex
1ynw_BRetinoic acid receptor RXR-alphaTGaCcHomo sapiensCrystal Structure of Vitamin D Receptor and 9-cis Retinoic Acid

3dzu_ADRetinoic acid receptor RXR-alphaAannaGGTnannGGTCAHomo sapiensIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on

3dzy_ADRetinoic acid receptor RXR-alphaTGnCnnnTGACCTnnnTTHomo sapiensIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on

3e00_ARetinoic acid receptor RXR-alphaTGaCCHomo sapiensIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on

3e00_ADRetinoic acid receptor RXR-alphaaAnnnAGGTCAnnGGnCAHomo sapiensIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on

4cn2_CRETINOIC ACID RECEPTOR RXR-ALPHAtGamCHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

4cn2_CDRETINOIC ACID RECEPTOR RXR-ALPHAGGTCAngGGTCAHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

4cn3_ADRETINOIC ACID RECEPTOR RXR-ALPHATGAACtnTGAACHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

4cn3_BCRETINOIC ACID RECEPTOR RXR-ALPHATGACCTnTGAACHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

4cn3_CRETINOIC ACID RECEPTOR RXR-ALPHATGACCHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

4cn5_ARETINOIC ACID RECEPTOR RXR-ALPHAGGTCAnnGHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

4cn5_ABRETINOIC ACID RECEPTOR RXR-ALPHATGAACynTGACCCHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

4cn7_FRETINOIC ACID RECEPTOR RXR-ALPHAGGtCaHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

4nqa_ABRetinoic acid receptor RXR-alphaAGGTnAnnnnAGGTCAHomo sapiensCrystal structure of liganded hRXR-alpha/hLXR-beta heterodimer on DNA
4nqa_HRetinoic acid receptor RXR-alphaAGGtcAHomo sapiensCrystal structure of liganded hRXR-alpha/hLXR-beta heterodimer on DNA
4nqa_HIRetinoic acid receptor RXR-alphaGnCCCnnnGTnnCCCHomo sapiensCrystal structure of liganded hRXR-alpha/hLXR-beta heterodimer on DNA
5uan_ABRetinoic acid receptor RXR-alphaGGtCannGGHomo sapiensCrystal structure of multi-domain RAR-beta-RXR-alpha heterodimer on DNA
6fbq_ARetinoic acid receptor RXR-alphaTGGGTCAnnGHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

6fbq_ABRetinoic acid receptor RXR-alphaTGGGTCAnGGTTCAHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain

6fbr_ABRetinoic acid receptor RXR-alphaTGAACnnTGACCHomo sapiensCrystal Structure of the Human Retinoid X Receptor DNA-Binding Domain



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