Database '3D-footprint 20210203' (DNA Binding Motifs 1051-1100)

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AccessionsNamesConsensusOrganismsDescription and notes
1a1k_ARADR ZIF268 VARIANTGCGTGGGmMus musculusRADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)
1a1i_ARADR ZIF268 ZINC FINGER PEPTIDEGCGTGGGCMus musculusRADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)
2f8x_CRecombining binding protein suppressor of hairless, isoform 4TTCCCACAHomo sapiensCrystal structure of activated Notch, CSL and MAML on HES-1

3brg_CRecombining binding protein suppressor of hairlessTTCCCACAMus musculusCSL (RBP-Jk) bound to DNA
3iag_CRecombining binding protein suppressor of hairlessTCaCAyGMus musculusCSL (RBP-Jk) bound to HES-1 nonconsensus site
3nbn_ADRecombining binding protein suppressor of hairlessCTgTGGGAAnnnnnnnnnnnnnnnTTCnCAHomo sapiensCrystal structure of a dimer of Notch Transcription Complex trimers

3nbn_DRecombining binding protein suppressor of hairlessTTCnCAnGHomo sapiensCrystal structure of a dimer of Notch Transcription Complex trimers

3v79_CRecombining binding protein suppressor of hairlessTGTGGGAAHomo sapiensStructure of human Notch1 transcription complex including CSL, RAM, ANK,

4j2x_CRecombining binding protein suppressor of hairlessTTCCCACAMus musculusCSL (RBP-Jk) with corepressor KyoT2 bound to DNA
5eg6_CRecombining binding protein suppressor of hairlessTGGGAAMus musculusCSL-RITA complex bound to DNA
6dks_GRecombining binding protein suppressor of hairlesstTncCAMus musculusStructure of the Rbpj-SHARP-DNA Repressor Complex
6py8_CRecombining binding protein suppressor of hairlessTGTvGGAAHomo sapiensCrystal structure of the RBPJ-NOTCH1-NRARP ternary complex bound to DNA
3ikt_ABRedox-sensing transcriptional repressor rexTGTGAnnnnnnTCACAGCstrain HB27 / ATCC BAA-163 / DSM 7039
Thermus thermophilus
Crystal structure of a Rex-family repressor/DNA/NAD+ complex from Thermus aquaticus
3ikt_BRedox-sensing transcriptional repressor rexTCACAGCstrain HB27 / ATCC BAA-163 / DSM 7039
Thermus thermophilus
Crystal structure of a Rex-family repressor/DNA/NAD+ complex from Thermus aquaticus
3il2_ABRedox-sensing transcriptional repressor rexGAGnnnnnnnnCnCngcstrain HB27 / ATCC BAA-163 / DSM 7039
Thermus thermophilus
Crystal structure of a Rex-family repressor R90D mutant/DNA complex from

3il2_BRedox-sensing transcriptional repressor rexCnCngcstrain HB27 / ATCC BAA-163 / DSM 7039
Thermus thermophilus
Crystal structure of a Rex-family repressor R90D mutant/DNA complex from

3ket_ARedox-sensing transcriptional repressor rextTTCACAAstrain NEM316
Streptococcus agalactiae serotype III
Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus

3wgi_CDRedox-sensing transcriptional repressor rexTTGTTAAnnnnTTAACAAThermoanaerobacter ethanolicus JW 200Crystal structure of RSP in complex with beta-NAD+ and operator

3wgi_DRedox-sensing transcriptional repressor rexTTGTTAAThermoanaerobacter ethanolicus JW 200Crystal structure of RSP in complex with beta-NAD+ and operator

2zhg_ARedox-sensitive transcriptional activator soxRaCttEscherichia coli
strain K12
Crystal structure of SoxR in complex with DNA
3clc_ABCDRegulatory proteinTGTnGACnnnnGnCACACGGnCnnnnATTCACAEnterobacter sp. RFL1396Crystal Structure of the Restriction-Modification Controller Protein C.Esp1396I Tetramer in

3clc_BRegulatory proteinCGgacEnterobacter sp. RFL1396Crystal Structure of the Restriction-Modification Controller Protein C.Esp1396I Tetramer in

3ufd_ABRegulatory proteinTGTCGACTATAGTCTACAEnterobacter sp. RFL1396C.Esp1396I bound to its highest affinity operator site OM
3ufd_ERegulatory proteinTGTAGACEnterobacter sp. RFL1396C.Esp1396I bound to its highest affinity operator site OM
4ivz_AFRegulatory proteinGTCGACAnTGTaGaCEnterobacter sp. RFL1396A Y37F mutant of C.Esp1396I bound to its highest affinity

4ivz_FRegulatory proteinTGTCGACEnterobacter sp. RFL1396A Y37F mutant of C.Esp1396I bound to its highest affinity

4iwr_ABRegulatory proteinTGTGACnnnnnnTCcGEnterobacter sp. RFL1396C.Esp1396I bound to a 25 base pair operator site
4iwr_EFRegulatory proteinCGGAmnnnnnGTCACAEnterobacter sp. RFL1396C.Esp1396I bound to a 25 base pair operator site
4iwr_FRegulatory proteingTCcGEnterobacter sp. RFL1396C.Esp1396I bound to a 25 base pair operator site
4x4b_ABCDRegulatory proteinTGTnGAcnnnnTnCACrCnGannnnnAGTcACAEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 2.1

4x4b_C
4x4d_C
Regulatory proteintGtGEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 2.1

4x4c_ABCDRegulatory proteinTGTGACTnnnnnTCnGCGTGnAnnnnGTCnACAEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 6.2

4x4c_CRegulatory proteintGtGEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 6.2

4x4d_ABCDRegulatory proteinTGTGACTnnnnntCnGyGTGnAnnnngTCnACAEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 10.3

4x4e_ABCDRegulatory proteinTGTnGACnnnnTnCACRCnGannnnnAGTcACAEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 14.4

4x4e_CRegulatory proteintGtGEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 14.4

4x4f_ABCDRegulatory proteinTGTGACTnnnnntCnGyGTGnAnnnnGTCnACAEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 20.6

4x4f_C
4x4g_C
Regulatory proteinCaCaEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 20.6

4x4g_ABCDRegulatory proteinTGTnGACnnnnTnCACRCnGAnnnnnAGTCACAEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 26.8

4x4h_ABCDRegulatory proteinTGTGACTnnnnntCnGyGTGnAnnnngTCnACAEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 35.7

4x4h_CRegulatory proteinCaCaEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 35.7

4x4i_ABCDRegulatory proteinTGTGACTnnnnnTCnGYGTGnAnnnnGTCnACAEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 44.6

4x4i_CRegulatory proteinCaCaEnterobacter sp. RFL1396RADIATION DAMAGE TO THE NUCLEOPROTEIN COMPLEX C.Esp1396I: DOSE (DWD) 44.6

1zs4_ARegulatory protein CIIgCAaCEnterobacteria phage lambda
Escherichia phage lambda
Structure of bacteriophage lambda cII protein in complex with DNA
1zs4_ACDRegulatory protein CIIGTTGCgnnnnTTTGCaEnterobacteria phage lambda
Escherichia phage lambda
Structure of bacteriophage lambda cII protein in complex with DNA
1jj4_ABRegulatory protein E2CAACCGnntnCGGTTGHuman papillomavirus type 18Human papillomavirus type 18 E2 DNA-binding domain bound to its

1jj4_BRegulatory protein E2CGGTtGHuman papillomavirus type 18Human papillomavirus type 18 E2 DNA-binding domain bound to its

2ayb_ABRegulatory protein E2CAACCGnnnnCGGTTGHuman papillomavirus type 6aCrystal structure of HPV6a E2 DNA Binding Domain bound to

2ayb_BRegulatory protein E2CGGTTGHuman papillomavirus type 6aCrystal structure of HPV6a E2 DNA Binding Domain bound to

2ayg_ARegulatory protein E2CGGTTGHuman papillomavirus type 6aCrystal structure of HPV6a E2 DNA binding domain bound to



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