Database '3D-footprint 20231221' (DNA Binding Motifs 1001-1050)

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AccessionsNamesConsensusOrganismsDescription and notes
4bqa_ADGPROTEIN C-ETS-2TTCCGnnnnCGGAAGnnnnCTTCCGHomo sapiensCrystal structure of the ETS domain of human ETS2 in						
						


						
6jrp_ADProtein capicua homologAATGAAArtTTTCATHomo sapiensCrystal structure of CIC-HMG-ETV5-DNA complex
6jrp_DProtein capicua homologAATGAAAHomo sapiensCrystal structure of CIC-HMG-ETV5-DNA complex
6jrp_GJProtein capicua homologATGAAAatTTTCATHomo sapiensCrystal structure of CIC-HMG-ETV5-DNA complex
3zp5_APROTEIN FEVtCCGHomo sapiensCrystal structure of the DNA binding ETS domain of the						
						


						
5vpe_CProtein fosBaGTcACcHomo sapiensTranscription factor FosB/JunD bZIP domain in complex with cognate DNA,						
						


						
2vy1_APROTEIN LEAFYTGGTnnnTAArabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex						
						


						
2vy2_APROTEIN LEAFYtGGtnnnnAArabidopsis thalianaStructure of LEAFY transcription factor from Arabidopsis thaliana in complex						
						


						
5eyo_CProtein maxGtGcHomo sapiensThe crystal structure of the Max bHLH domain in complex						
						


						
1au7_APROTEIN PIT-1TGTATATaCATRattus norvegicusPIT-1 MUTANT/DNA COMPLEX
1au7_ABPROTEIN PIT-1tcATGTATATACATRattus norvegicusPIT-1 MUTANT/DNA COMPLEX
1xpx_AProtein prosperocCTgDrosophila melanogasterStructural basis of prospero-DNA interaction; implications for transcription regulation in						
						


						
2han_AProtein ultraspiraclekGAACcDrosophila melanogasterStructural basis of heterodimeric ecdysteroid receptor interaction with natural response						
						


						
2han_ABProtein ultraspiracleGGTTCAnTncaCDrosophila melanogasterStructural basis of heterodimeric ecdysteroid receptor interaction with natural response						
						


						
6ryd_EFProtein WUSCHELGTTCATTCATArabidopsis thalianaWUS-HD bound to TGAA DNA
6ryd_FProtein WUSCHELATGAATgArabidopsis thalianaWUS-HD bound to TGAA DNA
6ryi_ABProtein WUSCHELCCATCACGTGACnAArabidopsis thalianaWUS-HD bound to G-Box DNA
6ryi_DEProtein WUSCHELATCAcgTGAArabidopsis thalianaWUS-HD bound to G-Box DNA
6ryi_EProtein WUSCHELaTCAArabidopsis thalianaWUS-HD bound to G-Box DNA
6ryl_ABCProtein WUSCHELCAACAcnTTAACnAArabidopsis thalianaWUS-HD bound to TAAT DNA
6ryl_DEProtein WUSCHELTyAATGCGTTsTArabidopsis thalianaWUS-HD bound to TAAT DNA
6ryl_EProtein WUSCHELCATTAAArabidopsis thalianaWUS-HD bound to TAAT DNA
1jnm_ABPROTO-ONCOGENE C-JUNTGACGTCAHomo sapiensCrystal Structure of the Jun/CRE Complex
1jnm_BPROTO-ONCOGENE C-JUNcGTcAHomo sapiensCrystal Structure of the Jun/CRE Complex
2wt7_APROTO-ONCOGENE PROTEIN C-FOSsTCAtMus musculusCrystal structure of the bZIP heterodimeric complex MafB:cFos bound to						
						


						
2wt7_ABPROTO-ONCOGENE PROTEIN C-FOSTGAGTnaGCaMus musculusCrystal structure of the bZIP heterodimeric complex MafB:cFos bound to						
						


						
1jfs_APURINE NUCLEOTIDE SYNTHESIS REPRESSORCGcanACgEscherichia coli
strain K12		PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEX
1jft_APURINE NUCLEOTIDE SYNTHESIS REPRESSORCGCnnACGEscherichia coli
strain K12		PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEX
1jh9_APURINE NUCLEOTIDE SYNTHESIS REPRESSORCGAanACgEscherichia coli
strain K12		PURINE REPRESSOR MUTANT-HYPOXANTHINE-PURF OPERATOR COMPLEX
1vpw_APURINE REPRESSORCGCanACGEscherichia coli
strain K12		STRUCTURE OF THE PURR MUTANT, L54M, BOUND TO HYPOXANTHINE AND						
						


						
2pua_APURINE REPRESSORCGCanACgEscherichia coli
strain K12		CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO						
						


						
2pub_APURINE REPRESSORCGcanACgEscherichia coli
strain K12		CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO						
						


						
6lty_ABPutative antitoxin HigA3CngAGnnnnACnaMycobacterium tuberculosis
strain ATCC 25618 / H37Rv		DNA bound antitoxin HigA3
6lty_BPutative antitoxin HigA3cygAGMycobacterium tuberculosis
strain ATCC 25618 / H37Rv		DNA bound antitoxin HigA3
6ama_ABCDGHKLOPYPutative DNA-binding proteinTACCCGnnnTACCCnAnnTACCCnAnnTACCCnnnTTACCCGnnTTACCCGnnnTACCCGnnnTACCCGnnTTACCCGnnnTACCCnnnTTACCCGstrain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745
Streptomyces venezuelae		Structure of S. coelicolor/S. venezuelae BldC-smeA-ssfA complex to 3.09 Angstrom
6ama_LPutative DNA-binding proteinannCGGGTAstrain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745
Streptomyces venezuelae		Structure of S. coelicolor/S. venezuelae BldC-smeA-ssfA complex to 3.09 Angstrom
6amk_APutative DNA-binding proteinAnnnGGGTAstrain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745
Streptomyces venezuelae		Structure of Streptomyces venezuelae BldC-whiI opt complex
6amk_ABPutative DNA-binding proteinTGTCCnnnnTGCCAstrain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745
Streptomyces venezuelae		Structure of Streptomyces venezuelae BldC-whiI opt complex
2e1c_APutative HTH-type transcriptional regulator PH1519TTTCAPyrococcus horikoshii
strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3		Structure of Putative HTH-type transcriptional regulator PH1519/DNA Complex
3zpl_ABPUTATIVE MARR-FAMILY TRANSCRIPTIONAL REPRESSORAAnGTTGAnnnnTCAAnCT2) / M145
Streptomyces coelicolor (strain ATCC BAA-471 / A3		Crystal structure of Sco3205, a MarR family transcriptional regulator from						
						


						
3zpl_BPUTATIVE MARR-FAMILY TRANSCRIPTIONAL REPRESSORAAGATTGA2) / M145
Streptomyces coelicolor (strain ATCC BAA-471 / A3		Crystal structure of Sco3205, a MarR family transcriptional regulator from						
						


						
3zpl_EFPUTATIVE MARR-FAMILY TRANSCRIPTIONAL REPRESSORAAnnTTGAnnnnTCAAnnTT2) / M145
Streptomyces coelicolor (strain ATCC BAA-471 / A3		Crystal structure of Sco3205, a MarR family transcriptional regulator from						
						


						
3zql_ABPUTATIVE REPRESSOR SIMREG2TCGTACGnCGTACAAStreptomyces antibioticusDNA-bound form of TetR-like repressor SimR
3zql_BPUTATIVE REPRESSOR SIMREG2TTCGTACGStreptomyces antibioticusDNA-bound form of TetR-like repressor SimR
3zql_CDPUTATIVE REPRESSOR SIMREG2TTGTACGnCGTAcGAStreptomyces antibioticusDNA-bound form of TetR-like repressor SimR
5d5x_BEPutative transcription factorCCcAGCmChaetomium thermophilum
strain DSM 1495 / CBS 144.50 / IMI 039719		Crystal structure of Chaetomium thermophilum Skn7 with SSRE DNA
5d5x_EPutative transcription factorTGGCTGChaetomium thermophilum
strain DSM 1495 / CBS 144.50 / IMI 039719		Crystal structure of Chaetomium thermophilum Skn7 with SSRE DNA
1a1h_AQGSR ZINC FINGER PEPTIDETgCCCaCGCMus musculusQGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)
3s8q_AR-M CONTROLLER PROTEINTGTGACntaEnterobacter sp. RFL1396Crystal structure of the R-M controller protein C.Esp1396I OL operator						
						


						
3s8q_ABR-M CONTROLLER PROTEINTGTGACnTAtAGTCCGEnterobacter sp. RFL1396Crystal structure of the R-M controller protein C.Esp1396I OL operator						
						


						
		

				

		


			

	
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