Database '3D-footprint 20210203' (DNA Binding Motifs 951-1000)

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AccessionsNamesConsensusOrganismsDescription and notes
2nll_ABPROTEIN (RETINOIC ACID RECEPTOR)GGtnAnnnnaGGTCAHomo sapiensRETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO

1bc8_CPROTEIN (SAP-1 ETS DOMAIN)CGGAaHomo sapiensSTRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74

1srs_ABPROTEIN (SERUM RESPONSE FACTOR (SRF))CCTAatTAGkHomo sapiensSERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA
1srs_BPROTEIN (SERUM RESPONSE FACTOR (SRF))GCCTAAHomo sapiensSERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA
1am9_APROTEIN (STEROL REGULATORY ELEMENT BINDING PROTEIN 1A)GgTGAHomo sapiensHUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER
1am9_ABPROTEIN (STEROL REGULATORY ELEMENT BINDING PROTEIN 1A)gTCaCcCCaCHomo sapiensHUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER
1am9_CDPROTEIN (STEROL REGULATORY ELEMENT BINDING PROTEIN 1A)GTGGGGTGACHomo sapiensHUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTER
1xbr_ABPROTEIN (T PROTEIN)TnnnCACnnAggTGnnnAXenopus laevisT DOMAIN FROM XENOPUS LAEVIS BOUND TO DNA
1cdw_APROTEIN (TATA BINDING PROTEIN (TBP))TATAAaAgHomo sapiensHUMAN TBP CORE DOMAIN COMPLEXED WITH DNA
1tgh_APROTEIN (TATA BINDING PROTEIN (TBP))gTATATATAHomo sapiensTATA BINDING PROTEIN (TBP)/DNA COMPLEX
1vol_AB
1vol_B
PROTEIN (TATA BINDING PROTEIN (TBP))cTtTTATAArabidopsis thalianaTFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX
1ytb_APROTEIN (TATA BINDING PROTEIN (TBP))GTAtATAAnnCGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CRYSTAL STRUCTURE OF A YEAST TBP/TATA-BOX COMPLEX
1ytf_ACPROTEIN (TATA BINDING PROTEIN (TBP))TATATAAAACSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
YEAST TFIIA/TBP/DNA COMPLEX
1ais_APROTEIN (TATA-BINDING PROTEIN)TTTTTAAAPyrococcus woeseiTATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI
1ais_ABPROTEIN (TATA-BINDING PROTEIN)TTTTTAAAPyrococcus woeseiTATA-BINDING PROTEIN/TRANSCRIPTION FACTOR (II)B/TATA-BOX COMPLEX FROM PYROCOCCUS WOESEI
1qpi_APROTEIN (TETRACYCLINE REPRESSOR)CcTaEscherichia coliCRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEX
2nll_BPROTEIN (THYROID HORMONE RECEPTOR)hGACCyHomo sapiensRETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO

2drp_DPROTEIN (TRAMTRACK DNA-BINDING DOMAIN)rAGGATaaDrosophila melanogasterTHE CRYSTAL STRUCTURE OF A TWO ZINC-FINGER PEPTIDE REVEALS AN

1cf7_BPROTEIN (TRANSCRIPTION FACTOR DP-2)CGCGaHomo sapiensSTRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE

1cf7_APROTEIN (TRANSCRIPTION FACTOR E2F-4)tTcGCGCGHomo sapiensSTRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE

1cf7_ABPROTEIN (TRANSCRIPTION FACTOR E2F-4)TCGCGCGHomo sapiensSTRUCTURAL BASIS OF DNA RECOGNITION BY THE HETERODIMERIC CELL CYCLE

1tf6_APROTEIN (TRANSCRIPTION FACTOR IIIA)TGGTnannnnnnkGATGGGAAACCXenopus laevisCO-CRYSTAL STRUCTURE OF XENOPUS TFIIIA ZINC FINGER DOMAIN BOUND TO

1an2_APROTEIN (TRANSCRIPTION FACTOR MAX (TF MAX))CGTgHomo sapiensRECOGNITION BY MAX OF ITS COGNATE DNA THROUGH A DIMERIC

1hlo_ABPROTEIN (TRANSCRIPTION FACTOR MAX)CCaCGtGHomo sapiensTHE CRYSTAL STRUCTURE OF AN INTACT HUMAN MAX-DNA COMPLEX: NEW

1hlo_BPROTEIN (TRANSCRIPTION FACTOR MAX)cGtGGHomo sapiensTHE CRYSTAL STRUCTURE OF AN INTACT HUMAN MAX-DNA COMPLEX: NEW

1ram_ABPROTEIN (TRANSCRIPTION FACTOR NF-KB P65)amnTTCCAMus musculusA NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
1pue_EPROTEIN (TRANSCRIPTION FACTOR PU.1 (TF PU.1))GGGRmMus musculusPU.1 ETS DOMAIN-DNA COMPLEX
2hdc_APROTEIN (TRANSCRIPTION FACTOR)TGTTATtttaRattus norvegicusSTRUCTURE OF TRANSCRIPTION FACTOR GENESIS/DNA COMPLEX
1tro_APROTEIN (TRP REPRESSOR)gtaCTEscherichia coli
strain K12
CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION
1tro_AGPROTEIN (TRP REPRESSOR)gtACTGTaCEscherichia coli
strain K12
CRYSTAL STRUCTURE OF TRP REPRESSOR OPERATOR COMPLEX AT ATOMIC RESOLUTION
1trr_ABPROTEIN (TRP REPRESSOR)AncGnnntnGtACGEscherichia coli
strain K12
TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX
1trr_DEGHPROTEIN (TRP REPRESSOR)CGTACnnnTACGCTAGCGTAnTnGTACGEscherichia coli
strain K12
TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX
1trr_JKPROTEIN (TRP REPRESSOR)AncGnnnnnGnACGEscherichia coli
strain K12
TANDEM BINDING IN CRYSTALS OF A TRP REPRESSOR/OPERATOR HALF-SITE COMPLEX
1b8i_APROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV)wTTATgGDrosophila melanogasterSTRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
1b8i_ABPROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV)GTGATTTATGGDrosophila melanogasterSTRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
1an4_APROTEIN (UPSTREAM STIMULATORY FACTOR)gTGAncHomo sapiensSTRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USF
1an4_ABPROTEIN (UPSTREAM STIMULATORY FACTOR)AnncCACGTGAnCHomo sapiensSTRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USF
1ubd_CPROTEIN (YY1 ZINC FINGER DOMAIN)CAAAATGGtGAAHomo sapiensCO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO

1a1l_APROTEIN (ZIF268 ZINC FINGER PEPTIDE)GCCCaCGCMus musculusZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE)
1aay_APROTEIN (ZIF268 ZINC FINGER PEPTIDE)aCGCCCaCGCMus musculusZIF268 ZINC FINGER-DNA COMPLEX
1zaa_CPROTEIN (ZIF268)ACGCCCACGCMus musculusZINC FINGER-DNA RECOGNITION: CRYSTAL STRUCTURE OF A ZIF268-DNA COMPLEX AT

3mfk_ABProtein C-ets-1AGGAagnnnnTCCHomo sapiensEts1 complex with stromelysin-1 promoter DNA
3mfk_BProtein C-ets-1tTCCtHomo sapiensEts1 complex with stromelysin-1 promoter DNA
3ri4_DProtein C-ets-1CATCCTHomo sapiensEts1 cooperative binding to widely separated sites on promoter DNA
3wts_CProtein C-ets-1aGGaHomo sapiensCrystal structure of the complex comprised of ETS1, RUNX1, CBFBETA,

4l0z_BProtein C-ets-1aGGAHomo sapiensCrystal structure of Runx1 and Ets1 bound to TCR alpha

4l18_BProtein C-ets-1aTCCtHomo sapiensCrystal structure of Runx1 and Ets1 bound to TCR alpha

4lg0_BProtein C-ets-1AGGAAAHomo sapiensStructure of a ternary FOXO1-ETS1 DNA complex
5zmc_BProtein C-ets-1CTTCCGHomo sapiensStructural Basis for Reactivation of -146C>T Mutant TERT Promoter by

4bqa_APROTEIN C-ETS-2tTCCgHomo sapiensCrystal structure of the ETS domain of human ETS2 in



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