Database '3D-footprint 20210203' (DNA Binding Motifs 901-950)

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AccessionsNamesConsensusOrganismsDescription and notes
1yrn_ABPROTEIN (MAT A1 HOMEODOMAIN)TGTAawTnnTtnCnTCASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA
1mnm_CPROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR)ATTTACAaSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
1yrn_BPROTEIN (MAT ALPHA2 HOMEODOMAIN)aTTTACASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA
1apl_CDPROTEIN (MAT-ALPHA2 HOMEODOMAIN)TTGTAnTTnATnTACASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL

1apl_DPROTEIN (MAT-ALPHA2 HOMEODOMAIN)TGTanTtSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL

1akh_APROTEIN (MATING-TYPE PROTEIN A-1)TnTnTCASaccharomyces cerevisiaeMAT A1/ALPHA2/DNA TERNARY COMPLEX
1akh_ABPROTEIN (MATING-TYPE PROTEIN A-1)TGAnAnAnnnTTTTACASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
MAT A1/ALPHA2/DNA TERNARY COMPLEX
1mnm_APROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)TaGgSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
1mnm_ABCDPROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)ATTrCCTAnnnnGGAAATTTACAASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE
1cma_ABPROTEIN (MET REPRESSOR)kGannTCEscherichia coli
strain K12
MET REPRESSOR/DNA COMPLEX + S-ADENOSYL-METHIONINE
1mj2_ABCDPROTEIN (METHIONINE REPRESSOR)AGACGTCyAGAnGACyEscherichia coli
strain K12
METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO

1mj2_BPROTEIN (METHIONINE REPRESSOR)mGnnkTEscherichia coli
strain K12
METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO

1bl0_APROTEIN (MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN)TTnGCAnnnnGTGGCEscherichia coli
strain K12
MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN (MARA)/DNA COMPLEX
1mdy_ABPROTEIN (MYOD BHLH DOMAIN)CanntGMus musculusCRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES

1mdy_CDPROTEIN (MYOD BHLH DOMAIN)CAnnTGtMus musculusCRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES

1vkx_BPROTEIN (NF-KAPPA B P50 SUBUNIT)GGGACMus musculusCRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE

1vkx_ABPROTEIN (NF-KAPPA B P65 SUBUNIT)GGAanGTCCCaMus musculusCRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE

1nfk_APROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB))kCCCMus musculusSTRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER
1nfk_ABPROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB))GGGAatTCCCMus musculusSTRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER
1svc_PPROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB))gnnTCCcHomo sapiensNFKB P50 HOMODIMER BOUND TO DNA
1a3q_APROTEIN (NUCLEAR FACTOR KAPPA-B P52)GGGGaaHomo sapiensHUMAN NF-KAPPA-B P52 BOUND TO DNA
1a3q_ABPROTEIN (NUCLEAR FACTOR KAPPA-B P52)GGGGATTCCCCHomo sapiensHUMAN NF-KAPPA-B P52 BOUND TO DNA
1b3t_APROTEIN (NUCLEAR PROTEIN EBNA1)GCTTCCCEpstein-Barr virus (strain B95-8) (HHV-4)
Human herpesvirus 4
EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX
1b3t_ABPROTEIN (NUCLEAR PROTEIN EBNA1)GGGAAGCaTAnGCTTCCCEpstein-Barr virus (strain B95-8) (HHV-4)
Human herpesvirus 4
EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX
1oct_CPROTEIN (OCT-1 POU DOMAIN)TATGCAAAHomo sapiensCRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN

1cit_APROTEIN (ORPHAN NUCLEAR RECEPTOR NGFI-B)TGACCTnTTRattus norvegicusDNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B
1b72_BPROTEIN (PBX1)aTCAtHomo sapiensPBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
1a0a_ABPROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4)CaCGTGGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX
1a0a_BPROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4)cgTGGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX
1pdn_CPROTEIN (PRD PAIRED)CnTnACGDrosophila melanogasterCRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS

1qp0_APROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR)CGCancCGEscherichia coli
strain K12
PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
1qp4_APROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR)CGCnnTCGEscherichia coli
strain K12
PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
1qp7_APROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR)CGCannCgEscherichia coli
strain K12
PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
1qpz_APROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR)CGcanACgEscherichia coli
strain K12
PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
1qqa_APROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR)CGCangCgEscherichia coli
strain K12
PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
2pue_APROTEIN (PURINE REPRESSOR )CGCanACgEscherichia coli
strain K12
CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO

1bdh_A
1qqb_A
PROTEIN (PURINE REPRESSOR), PURINE NUCLEOTIDE SYNTHESIS REPRESSORCGcnnnCgEscherichia coli
strain K12
PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
1bdi_APROTEIN (PURINE REPRESSOR)CGCanACgEscherichia coli
strain K12
PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX
1pnr_APROTEIN (PURINE REPRESSOR)CGAanACgEscherichia coli
strain K12
PURINE REPRESSOR-HYPOXANTHINE-PURF-OPERATOR COMPLEX
1wet_APROTEIN (PURINE REPRESSOR)CGAanACgEscherichia coli
strain K12
STRUCTURE OF THE PURR-GUANINE-PURF OPERATOR COMPLEX
1zay_APROTEIN (PURINE REPRESSOR)CGAanATEscherichia coli
strain K12
PURINE REPRESSOR-HYPOXANTHINE-MODIFIED-PURF-OPERATOR COMPLEX
2puc_APROTEIN (PURINE REPRESSOR)CGcanACgEscherichia coli
strain K12
CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO

2pud_APROTEIN (PURINE REPRESSOR)CGcnnACgEscherichia coli
strain K12
CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO

2puf_APROTEIN (PURINE REPRESSOR)CGCanACgEscherichia coli
strain K12
CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO

2pug_APROTEIN (PURINE REPRESSOR)CGcanACgEscherichia coli
strain K12
CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO

1pyi_ABPROTEIN (PYRIMIDINE PATHWAY REGULATOR 1)CGGnnnnnnccgSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CRYSTAL STRUCTURE OF A PPR1-DNA COMPLEX: DNA RECOGNITION BY PROTEINS

1a1j_APROTEIN (RADR ZIF268 ZINC FINGER PEPTIDE)gCCCaCGCMus musculusRADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)
1by4_B
1dsz_A
PROTEIN (RETINOIC ACID RECEPTOR RXR-ALPHA), RETINOIC ACID RECEPTOR ALPHAtGaCCHomo sapiensSTRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR

1by4_BCPROTEIN (RETINOIC ACID RECEPTOR RXR-ALPHA)GGTCAnnnGGTCAHomo sapiensSTRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR

2nll_APROTEIN (RETINOIC ACID RECEPTOR)GGtCAHomo sapiensRETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO



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