Database '3D-footprint 20231221' (DNA Binding Motifs 901-950)
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| Accessions | Names | Consensus | Organisms | Description and notes |
|---|---|---|---|---|
| 1yrn_AB | PROTEIN (MAT A1 HOMEODOMAIN) | TGTAawTnnTtnCnTCA | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA |
| 1mnm_C | PROTEIN (MAT ALPHA-2 TRANSCRIPTIONAL REPRESSOR) | ATTTACAa | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE |
| 1yrn_B | PROTEIN (MAT ALPHA2 HOMEODOMAIN) | aTTTACA | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNA |
| 1apl_CD | PROTEIN (MAT-ALPHA2 HOMEODOMAIN) | TTGTAnTTnATnTACA | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL 
|
| 1apl_D | PROTEIN (MAT-ALPHA2 HOMEODOMAIN) | TGTanTt | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL
|
| 1akh_A | PROTEIN (MATING-TYPE PROTEIN A-1) | TnTnTCA | Saccharomyces cerevisiae | MAT A1/ALPHA2/DNA TERNARY COMPLEX |
| 1akh_AB | PROTEIN (MATING-TYPE PROTEIN A-1) | TGAnAnAnnnTTTTACA | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | MAT A1/ALPHA2/DNA TERNARY COMPLEX |
| 1mnm_A | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) | TaGg | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE |
| 1mnm_ABCD | PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR) | ATTrCCTAnnnnGGAAATTTACAA | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | YEAST MATALPHA2/MCM1/DNA TERNARY TRANSCRIPTION COMPLEX CRYSTAL STRUCTURE |
| 1cma_AB | PROTEIN (MET REPRESSOR) | kGannTC | Escherichia coli strain K12 | MET REPRESSOR/DNA COMPLEX + S-ADENOSYL-METHIONINE |
| 1mj2_ABCD | PROTEIN (METHIONINE REPRESSOR) | AGACGTCyAGAnGACy | Escherichia coli strain K12 | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO
|
| 1mj2_B | PROTEIN (METHIONINE REPRESSOR) | mGnnkT | Escherichia coli strain K12 | METHIONINE REPRESSOR MUTANT (Q44K) PLUS COREPRESSOR (S-ADENOSYL METHIONINE) COMPLEXED TO
|
| 1bl0_A | PROTEIN (MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN) | TTnGCAnnnnGTGGC | Escherichia coli strain K12 | MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN (MARA)/DNA COMPLEX |
| 1mdy_AB | PROTEIN (MYOD BHLH DOMAIN) | CanntG | Mus musculus | CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES
|
| 1mdy_CD | PROTEIN (MYOD BHLH DOMAIN) | CAnnTGt | Mus musculus | CRYSTAL STRUCTURE OF MYOD BHLH DOMAIN BOUND TO DNA: PERSPECTIVES
|
| 1vkx_B | PROTEIN (NF-KAPPA B P50 SUBUNIT) | GGGAC | Mus musculus | CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE
|
| 1vkx_AB | PROTEIN (NF-KAPPA B P65 SUBUNIT) | GGAanGTCCCa | Mus musculus | CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE
|
| 1nfk_A | PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) | kCCC | Mus musculus | STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER |
| 1nfk_AB | PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) | GGGAatTCCC | Mus musculus | STRUCTURE OF THE NUCLEAR FACTOR KAPPA-B (NF-KB) P50 HOMODIMER |
| 1svc_P | PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) | gnnTCCc | Homo sapiens | NFKB P50 HOMODIMER BOUND TO DNA |
| 1a3q_A | PROTEIN (NUCLEAR FACTOR KAPPA-B P52) | GGGGaa | Homo sapiens | HUMAN NF-KAPPA-B P52 BOUND TO DNA |
| 1a3q_AB | PROTEIN (NUCLEAR FACTOR KAPPA-B P52) | GGGGATTCCCC | Homo sapiens | HUMAN NF-KAPPA-B P52 BOUND TO DNA |
| 1b3t_A | PROTEIN (NUCLEAR PROTEIN EBNA1) | GCTTCCC | Epstein-Barr virus (strain B95-8) (HHV-4) Human herpesvirus 4 | EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX |
| 1b3t_AB | PROTEIN (NUCLEAR PROTEIN EBNA1) | GGGAAGCaTAnGCTTCCC | Epstein-Barr virus (strain B95-8) (HHV-4) Human herpesvirus 4 | EBNA-1 NUCLEAR PROTEIN/DNA COMPLEX |
| 1oct_C | PROTEIN (OCT-1 POU DOMAIN) | TATGCAAA | Homo sapiens | CRYSTAL STRUCTURE OF THE OCT-1 POU DOMAIN BOUND TO AN
|
| 1cit_A | PROTEIN (ORPHAN NUCLEAR RECEPTOR NGFI-B) | TGACCTnTT | Rattus norvegicus | DNA-BINDING MECHANISM OF THE MONOMERIC ORPHAN NUCLEAR RECEPTOR NGFI-B |
| 1b72_B | PROTEIN (PBX1) | aTCAt | Homo sapiens | PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX |
| 1a0a_AB | PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4) | CaCGTGG | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX |
| 1a0a_B | PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4) | cgTGG | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX |
| 1pdn_C | PROTEIN (PRD PAIRED) | CnTnACG | Drosophila melanogaster | CRYSTAL STRUCTURE OF A PAIRED DOMAIN-DNA COMPLEX AT 2.5 ANGSTROMS
|
| 1qp0_A | PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) | CGCancCG | Escherichia coli strain K12 | PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX |
| 1qp4_A | PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) | CGCnnTCG | Escherichia coli strain K12 | PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX |
| 1qp7_A | PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) | CGCannCg | Escherichia coli strain K12 | PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX |
| 1qpz_A | PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) | CGcanACg | Escherichia coli strain K12 | PURINE REPRESSOR-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX |
| 1qqa_A | PROTEIN (PURINE NUCLEOTIDE SYNTHESIS REPRESSOR) | CGCangCg | Escherichia coli strain K12 | PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX |
| 2pue_A | PROTEIN (PURINE REPRESSOR ) | CGCanACg | Escherichia coli strain K12 | CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO
|
| 1bdh_A 1qqb_A | PROTEIN (PURINE REPRESSOR), PURINE NUCLEOTIDE SYNTHESIS REPRESSOR | CGcnnnCg | Escherichia coli strain K12 | PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX |
| 1bdi_A | PROTEIN (PURINE REPRESSOR) | CGCanACg | Escherichia coli strain K12 | PURINE REPRESSOR MUTANT-HYPOXANTHINE-PALINDROMIC OPERATOR COMPLEX |
| 1pnr_A | PROTEIN (PURINE REPRESSOR) | CGAanACg | Escherichia coli strain K12 | PURINE REPRESSOR-HYPOXANTHINE-PURF-OPERATOR COMPLEX |
| 1wet_A | PROTEIN (PURINE REPRESSOR) | CGAanACg | Escherichia coli strain K12 | STRUCTURE OF THE PURR-GUANINE-PURF OPERATOR COMPLEX |
| 1zay_A | PROTEIN (PURINE REPRESSOR) | CGAanAT | Escherichia coli strain K12 | PURINE REPRESSOR-HYPOXANTHINE-MODIFIED-PURF-OPERATOR COMPLEX |
| 2puc_A | PROTEIN (PURINE REPRESSOR) | CGcanACg | Escherichia coli strain K12 | CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO
|
| 2pud_A | PROTEIN (PURINE REPRESSOR) | CGcnnACg | Escherichia coli strain K12 | CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO
|
| 2puf_A | PROTEIN (PURINE REPRESSOR) | CGCanACg | Escherichia coli strain K12 | CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO
|
| 2pug_A | PROTEIN (PURINE REPRESSOR) | CGcanACg | Escherichia coli strain K12 | CRYSTAL STRUCTURE OF THE LACI FAMILY MEMBER, PURR, BOUND TO
|
| 1pyi_AB | PROTEIN (PYRIMIDINE PATHWAY REGULATOR 1) | CGGnnnnnnccg | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | CRYSTAL STRUCTURE OF A PPR1-DNA COMPLEX: DNA RECOGNITION BY PROTEINS
|
| 1a1j_A | PROTEIN (RADR ZIF268 ZINC FINGER PEPTIDE) | gCCCaCGC | Mus musculus | RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE) |
| 1by4_B 1dsz_A | PROTEIN (RETINOIC ACID RECEPTOR RXR-ALPHA), RETINOIC ACID RECEPTOR ALPHA | tGaCC | Homo sapiens | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR
|
| 1by4_BC | PROTEIN (RETINOIC ACID RECEPTOR RXR-ALPHA) | GGTCAnnnGGTCA | Homo sapiens | STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR
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| 2nll_A | PROTEIN (RETINOIC ACID RECEPTOR) | GGtCA | Homo sapiens | RETINOID X RECEPTOR-THYROID HORMONE RECEPTOR DNA-BINDING DOMAIN HETERODIMER BOUND TO
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