Database '3D-footprint 20231221' (DNA Binding Motifs 851-900)
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| Accessions | Names | Consensus | Organisms | Description and notes |
|---|---|---|---|---|
| 3cro_LR | PROTEIN (434 CRO) | TAMwAnnnnnnkTGTA | Phage 434 | THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION |
| 3cro_R | PROTEIN (434 CRO) | tAcA | Phage 434 | THE PHAGE 434 CRO/OR1 COMPLEX AT 2.5 ANGSTROMS RESOLUTION |
| 1per_L | PROTEIN (434 REPRESSOR) | tACaA | Phage 434 | THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR 
|
| 1per_LR | PROTEIN (434 REPRESSOR) | tACaAgwwarnvtGTa | Phage 434 | THE COMPLEX BETWEEN PHAGE 434 REPRESSION DNA-BINDING DOMAIN AND OPERATOR
|
| 1rpe_L | PROTEIN (434 REPRESSOR) | TTTTT | Phage 434 | THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION |
| 1rpe_LR | PROTEIN (434 REPRESSOR) | AAmAAgnnnnATTGTA | Phage 434 | THE PHAGE 434 OR2/R1-69 COMPLEX AT 2.5 ANGSTROMS RESOLUTION |
| 1bdv_ABCD | PROTEIN (ARC FV10 REPRESSOR) | TnTAGAAnnncTCTA | Enterobacteria phage P22 | ARC FV10 COCRYSTAL |
| 1bdv_B | PROTEIN (ARC FV10 REPRESSOR) | CTnTAnnA | Enterobacteria phage P22 | ARC FV10 COCRYSTAL |
| 1par_ABCD | PROTEIN (ARC REPRESSOR) | TGTTAGAannnnTCTAyyA | Enterobacteria phage P22 | DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE |
| 1par_B | PROTEIN (ARC REPRESSOR) | TAnta | Enterobacteria phage P22 | DNA RECOGNITION BY BETA-SHEETS IN THE ARC REPRESSOR-OPERATOR CRYSTAL STRUCTURE |
| 1cgp_AB | PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP)) | TGTGACnnnnTTCACA | Escherichia coli strain K12 | CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE |
| 1cgp_B | PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP)) | TgTgAc | Escherichia coli strain K12 | CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE |
| 1run_B | PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP)) | ATcaCA | Escherichia coli strain K12 | CATABOLITE GENE ACTIVATOR PROTEIN (CAP)/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE |
| 1ruo_B | PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN (CAP)) | TgtGA | Escherichia coli strain K12 | CATABOLITE GENE ACTIVATOR PROTEIN (CAP) MUTANT/DNA COMPLEX + ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE |
| 2cgp_A | PROTEIN (CATABOLITE GENE ACTIVATOR PROTEIN) | tGTGAc | Escherichia coli strain K12 | CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX, ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE |
| 2bop_A | PROTEIN (E2) | CGGt | Bovine papillomavirus type 1 | CRYSTAL STRUCTURE AT 1.7 ANGSTROMS OF THE BOVINE PAPILLOMAVIRUS-1 E2
|
| 2hdd_A | PROTEIN (ENGRAILED HOMEODOMAIN Q50K) | tGGATTAC | Drosophila melanogaster | ENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEX |
| 2hdd_AB | PROTEIN (ENGRAILED HOMEODOMAIN Q50K) | TCcnnGGaTTAC | Drosophila melanogaster | ENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEX |
| 1hdd_CD | PROTEIN (ENGRAILED HOMEODOMAIN) | TAnnnTnaTTAC | Drosophila melanogaster | CRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS
|
| 1hcq_AB | PROTEIN (ESTROGEN RECEPTOR) | GGTCAnnntGaCC | Homo sapiens | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND
|
| 1hcq_E | PROTEIN (ESTROGEN RECEPTOR) | yGaCC | Homo sapiens | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND
|
| 1hcq_EF | PROTEIN (ESTROGEN RECEPTOR) | GGTCAnnnTGACC | Homo sapiens | THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND
|
| 1bc7_C | PROTEIN (ETS-DOMAIN PROTEIN) | cATCCt | Homo sapiens | SERUM RESPONSE FACTOR ACCESSORY PROTEIN 1A (SAP-1)/DNA COMPLEX |
| 2gli_A | PROTEIN (FIVE-FINGER GLI) | CGnnTTGGTTGGTC | Homo sapiens | FIVE-FINGER GLI/DNA COMPLEX |
| 1awc_A | PROTEIN (GA BINDING PROTEIN ALPHA) | cGGAAg | Mus musculus | MOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNA |
| 1d66_AB | PROTEIN (GAL4) | CGGnnnnnnnnnntCCG | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | DNA RECOGNITION BY GAL4: STRUCTURE OF A PROTEIN/DNA COMPLEX |
| 1dgc_A | PROTEIN (GCN4) | CGTca | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE
|
| 1ysa_CD | PROTEIN (GCN4) | TGAGTCA | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A
|
| 1ysa_D | PROTEIN (GCN4) | TgAC | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | THE GCN4 BASIC REGION LEUCINE ZIPPER BINDS DNA AS A
|
| 2dgc_A | PROTEIN (GCN4) | CGTCa | Saccharomyces cerevisiae Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE DNA |
| 1bdt_ABCD | PROTEIN (GENE-REGULATING PROTEIN ARC) | TTaTAGAannnnTCTACcA | Enterobacteria phage P22 | WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX |
| 1bdt_C | PROTEIN (GENE-REGULATING PROTEIN ARC) | tnatAGA | Enterobacteria phage P22 | WILD TYPE GENE-REGULATING PROTEIN ARC/DNA COMPLEX |
| 1glu_A | PROTEIN (GLUCOCORTICOID RECEPTOR) | TGTnCt | Rattus norvegicus | CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH
|
| 1glu_AB | PROTEIN (GLUCOCORTICOID RECEPTOR) | GnnnnnnnnTGTnCT | Rattus norvegicus | CRYSTALLOGRAPHIC ANALYSIS OF THE INTERACTION OF THE GLUCOCORTICOID RECEPTOR WITH
|
| 1hwt_CD | PROTEIN (HEME ACTIVATOR PROTEIN) | CGCnnwTATCGs | Saccharomyces cerevisiae | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING
|
| 1hwt_GH | PROTEIN (HEME ACTIVATOR PROTEIN) | GCGATAatnGCG | Saccharomyces cerevisiae | STRUCTURE OF A HAP1/DNA COMPLEX REVEALS DRAMATICALLY ASYMMETRIC DNA BINDING
|
| 2hap_CD | PROTEIN (HEME ACTIVATOR PROTEIN) | CGCtntTATCGC | Saccharomyces cerevisiae | STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN
|
| 2hap_D | PROTEIN (HEME ACTIVATOR PROTEIN) | ATAAnaGCG | Saccharomyces cerevisiae | STRUCTURE OF A HAP1-18/DNA COMPLEX REVEALS THAT PROTEIN/DNA INTERACTIONS CAN
|
| 1b8i_B | PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE) | gTGAt | Drosophila melanogaster | STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX |
| 1b72_A | PROTEIN (HOMEOBOX PROTEIN HOX-B1) | TTCa | Homo sapiens | PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX |
| 1b72_AB | PROTEIN (HOMEOBOX PROTEIN HOX-B1) | ATGATTGAA | Homo sapiens | PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX |
| 1if1_AB | PROTEIN (INTERFERON REGULATORY FACTOR 1) | TGGAnnTACtTACA | Mus musculus | INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA |
| 1if1_B | PROTEIN (INTERFERON REGULATORY FACTOR 1) | TGrAwG | Mus musculus | INTERFERON REGULATORY FACTOR 1 (IRF-1) COMPLEX WITH DNA |
| 1cjg_AB | PROTEIN (LAC REPRESSOR) | TgAGCGCTCA | Escherichia coli strain K12 | NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX |
| 1cjg_B | PROTEIN (LAC REPRESSOR) | TGAGC | Escherichia coli strain K12 | NMR STRUCTURE OF LAC REPRESSOR HP62-DNA COMPLEX |
| 1lli_AB | PROTEIN (LAMBDA REPRESSOR) | TAnCAmTnGsGGtGaTA | Enterobacteria phage lambda Escherichia phage lambda | THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT
|
| 1lli_B | PROTEIN (LAMBDA REPRESSOR) | GcGGtGaTA | Enterobacteria phage lambda Escherichia phage lambda | THE CRYSTAL STRUCTURE OF A MUTANT PROTEIN WITH ALTERED BUT
|
| 1lmb_34 | PROTEIN (LAMBDA REPRESSOR) | TATCACCGCnATnGnTA | Enterobacteria phage lambda Escherichia phage lambda | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX |
| 1lmb_4 | PROTEIN (LAMBDA REPRESSOR) | TAtCaCCGC | Enterobacteria phage lambda Escherichia phage lambda | REFINED 1.8 ANGSTROM CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR-OPERATOR COMPLEX |
| 2lef_A | PROTEIN (LYMPHOID ENHANCER-BINDING FACTOR) | CtTCAaAG | Mus musculus | LEF1 HMG DOMAIN (FROM MOUSE), COMPLEXED WITH DNA (15BP), NMR,
|
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