Database '3D-footprint 20210203' (DNA Binding Motifs 801-850)

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AccessionsNamesConsensusOrganismsDescription and notes
1a6y_AORPHAN NUCLEAR RECEPTOR NR1D1GrCCtHomo sapiensREVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
1a6y_ABORPHAN NUCLEAR RECEPTOR NR1D1TGaCCnnnTGACCtHomo sapiensREVERBA ORPHAN NUCLEAR RECEPTOR/DNA COMPLEX
1ga5_ABORPHAN NUCLEAR RECEPTOR NR1D1AnnAGGTCACnnGGGCAHomo sapiensCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN

1ga5_FORPHAN NUCLEAR RECEPTOR NR1D1tGaCCHomo sapiensCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN

1hlz_ABORPHAN NUCLEAR RECEPTOR NR1D1TGACCTnnTGACCAnnTHomo sapiensCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN

1hlz_BORPHAN NUCLEAR RECEPTOR NR1D1aAnnaGGTCAHomo sapiensCRYSTAL STRUCTURE OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB(ALPHA) DNA-BINDING DOMAIN

2a66_AOrphan nuclear receptor NR5A2TGnCCTTGAHomo sapiensHuman Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex

6ir8_AOsWRKY45tnnnACCOryza sativa
Oryza sativa Japonica Group
Rice WRKY/DNA complex
1fos_EP55-C-FOS PROTO-ONCOGENE PROTEINAGTCAHomo sapiensTWO HUMAN C-FOS:C-JUN:DNA COMPLEXES
1fos_EFP55-C-FOS PROTO-ONCOGENE PROTEINTgACTcaHomo sapiensTWO HUMAN C-FOS:C-JUN:DNA COMPLEXES
1fos_GHP55-C-FOS PROTO-ONCOGENE PROTEINgACTCAnaHomo sapiensTWO HUMAN C-FOS:C-JUN:DNA COMPLEXES
3cmy_APaired box protein Pax-3GATTATHomo sapiensStructure of a homeodomain in complex with DNA
1mdm_ABPAIRED BOX PROTEIN PAX-5CCAnGnnnnCnnnTCTCCGHomo sapiens
Mus musculus
INHIBITED FRAGMENT OF ETS-1 AND PAIRED DOMAIN OF PAX5 BOUND

1k78_APaired Box Protein Pax5CCAnTnnanCnTnTCTHomo sapiensPax5(1-149)+Ets-1(331-440)+DNA
1k78_EFPaired Box Protein Pax5CGGAGAnnnGnnnnanngGHomo sapiens
Mus musculus
Pax5(1-149)+Ets-1(331-440)+DNA
1fjl_BPAIRED PROTEINGTAATcADrosophila melanogasterHOMEODOMAIN FROM THE DROSOPHILA PAIRED PROTEIN BOUND TO A DNA

2h1k_BPancreatic and duodenal homeobox 1CTAAnAAMesocricetus auratusCrystal structure of the Pdx1 homeodomain in complex with DNA
1xsd_Apenicillinase repressorTGTAgtStaphylococcus aureusCrystal structure of the BlaI repressor in complex with DNA
2p7c_BPenicillinase repressoraTTACAtBacillus licheniformisSolution structure of the bacillus licheniformis BlaI monomeric form in

3dzu_DPeroxisome proliferator-activated receptor gammaAAAnnAGGTcAHomo sapiensIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on

3dzy_DPeroxisome proliferator-activated receptor gammaTGACCtnnnTTHomo sapiensIntact PPAR gamma - RXR alpha Nuclear Receptor Complex on

3igm_APF14_0633 proteintGCaTGCisolate 3D7
Plasmodium falciparum
A 2.2A crystal structure of the AP2 domain of PF14_0633

1gxp_APHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEINCTtTnngACAEscherichia coli
strain K12
PhoB effector domain in complex with pho box DNA.
1gxp_ABPHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEINCCntGACAnCTTTnnGACAEscherichia coli
strain K12
PhoB effector domain in complex with pho box DNA.
1gxp_EFPHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEINCnnGACAnCTTTnTGACAEscherichia coli
strain K12
PhoB effector domain in complex with pho box DNA.
2z33_APhosphate regulon transcriptional regulatory protein phoBTGTcnnAEscherichia coli
strain K12
Solution structure of the DNA complex of PhoB DNA-binding/transactivation Domain
2lkx_APituitary homeobox 3GgATTAGHomo sapiensNMR structure of the homeodomain of Pitx2 in complex with

5wc9_ABPituitary-specific positive transcription factor 1ATTCATTCATTCAHomo sapiensHuman Pit-1 and 4xCATT DNA complex
5wc9_EPituitary-specific positive transcription factor 1CATTCATHomo sapiensHuman Pit-1 and 4xCATT DNA complex
5wc9_EFPituitary-specific positive transcription factor 1TTCATTCATTCATHomo sapiensHuman Pit-1 and 4xCATT DNA complex
1cqt_AIPOU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1tATnCAAATAHomo sapiensCRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE,

1cqt_BJPOU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1TATTTGCATAHomo sapiensCRYSTAL STRUCTURE OF A TERNARY COMPLEX CONTAINING AN OCA-B PEPTIDE,

2xsd_CPOU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 1CATGCATMus musculusCrystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound

3l1p_APOU domain, class 5, transcription factor 1CATTTsAAAMus musculusPOU protein:DNA complex
3l1p_ABPOU domain, class 5, transcription factor 1CATTTGCCTTTCAAATGMus musculusPOU protein:DNA complex
6ht5_EPOU domain, class 5, transcription factor 1tATgCMus musculusOct4/Sox2:UTF1 structure
3d1n_IKPOU domain, class 6, transcription factor 1ATATnnTATAnnyATAntTTATHomo sapiensStructure of human Brn-5 transcription factor in complex with corticotrophin-releasing

3d1n_MPOU domain, class 6, transcription factor 1TATAnTTTATHomo sapiensStructure of human Brn-5 transcription factor in complex with corticotrophin-releasing

3d1n_MOPOU domain, class 6, transcription factor 1ATAAAnTATAnnTATAnTTTATHomo sapiensStructure of human Brn-5 transcription factor in complex with corticotrophin-releasing

5v3g_APR domain zinc finger protein 9GGGnAACGCTCACTGGGGTCHomo sapiensPRDM9-allele-C ZnF8-13
1puf_BPre-B-cell leukemia transcription factor-1TaTCATHomo sapiensCrystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
3mzh_APROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY CRP/FNR-FAMILY)TGTGAMycobacterium tuberculosis
strain ATCC 25618 / H37Rv
Crystal structure of cAMP receptor protein from mycobacterium tuberculosis in

3mzh_ABPROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY CRP/FNR-FAMILY)TGTGAnnnnnGTCACGMycobacterium tuberculosis
strain ATCC 25618 / H37Rv
Crystal structure of cAMP receptor protein from mycobacterium tuberculosis in

4fx4_ABPROBABLE TRANSCRIPTIONAL REPRESSOR PROTEINATnCGTGTannTACACGMycobacterium tuberculosis
strain CDC 1551 / Oshkosh
Crystal structure of M. tuberculosis transcriptional regulator MOSR (Rv1049) in

6j4f_FProbable WRKY transcription factor 2GGTnnAAGArabidopsis thalianaCrystal structure of the AtWRKY2 domain
2lex_AProbable WRKY transcription factor 4TnTnACArabidopsis thalianaComplex of the C-terminal WRKY domain of AtWRKY4 and a

2c7a_ABPROGESTERONE RECEPTORCaGnaCAnnnTGTnCngHomo sapiensSTRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEX
2c7a_BPROGESTERONE RECEPTORTGTnCTGHomo sapiensSTRUCTURE OF THE PROGESTERONE RECEPTOR-DNA COMPLEX
1zme_CDPROLINE UTILIZATION TRANSCRIPTION ACTIVATORCGGnnnnCcannnCCGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CRYSTAL STRUCTURE OF PUT3/DNA COMPLEX
1zme_DPROLINE UTILIZATION TRANSCRIPTION ACTIVATORCcannnCCGSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CRYSTAL STRUCTURE OF PUT3/DNA COMPLEX


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