Database '3D-footprint 20210203' (DNA Binding Motifs 751-800)

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AccessionsNamesConsensusOrganismsDescription and notes
1zg5_ENitrate/nitrite response regulator protein narLThCCmCEscherichia coli
strain K12
NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site
1zg5_EFNitrate/nitrite response regulator protein narLTACCCCtnnAGGGGTAEscherichia coli
strain K12
NarL complexed to narG-89 promoter palindromic tail-to-tail DNA site
5gat_ANITROGEN REGULATORY PROTEIN AREAAtCgEmericella nidulans
Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
SOLUTION NMR STRUCTURE OF THE WILD TYPE DNA BINDING DOMAIN

6gat_ANITROGEN REGULATORY PROTEIN AREATGATnGEmericella nidulans
Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
SOLUTION NMR STRUCTURE OF THE L22V MUTANT DNA BINDING DOMAIN

7gat_ANITROGEN REGULATORY PROTEIN AREATGatEmericella nidulans
Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
SOLUTION NMR STRUCTURE OF THE L22V MUTANT DNA BINDING DOMAIN

4omy_ANolRCTAASinorhizobium frediiCrystal Structure of SeMet NolR from Sinorhizobium fredii in complex

4omy_ABNolRTnTCAGnnnnnnCTAaSinorhizobium frediiCrystal Structure of SeMet NolR from Sinorhizobium fredii in complex

4omy_CDNolRAannTCAGnnnnnnCTmASinorhizobium frediiCrystal Structure of SeMet NolR from Sinorhizobium fredii in complex

4on0_ABNolRTAnCATCAGnnnnnnCTAASinorhizobium frediiCrystal Structure of NolR from Sinorhizobium fredii in complex with

4on0_BNolRCTGATGntASinorhizobium frediiCrystal Structure of NolR from Sinorhizobium fredii in complex with

4on0_CDNolRTTAGnnnnnnCTkaTGSinorhizobium frediiCrystal Structure of NolR from Sinorhizobium fredii in complex with

1j5n_ANonhistone chromosomal protein 6AAACAATcSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Solution Structure of the Non-Sequence-Specific HMGB protein NHP6A in complex

3do7_BNuclear factor NF-kappa-B p100 subunitGGGaHomo sapiensX-ray structure of a NF-kB p52/RelB/DNA complex
2i9t_BNuclear factor NF-kappa-B p105 subunitttCCCMus musculusStructure of NF-kB p65-p50 heterodimer bound to PRDII element of

1le5_ABNuclear factor NF-kappa-B p65 subunitTGGAATTTCCCMus musculusCrystal structure of a NF-kB heterodimer bound to an IFNb-kB
1le5_ENuclear factor NF-kappa-B p65 subunittTCCMus musculusCrystal structure of a NF-kB heterodimer bound to an IFNb-kB
1le5_EFNuclear factor NF-kappa-B p65 subunitGGGAantTCCMus musculusCrystal structure of a NF-kB heterodimer bound to an IFNb-kB
1le9_ABNUCLEAR FACTOR NF-KAPPA-B P65 SUBUNITaGGAaaGTCCMus musculusCrystal structure of a NF-kB heterodimer bound to the Ig/HIV-kB

1le9_EFNUCLEAR FACTOR NF-KAPPA-B P65 SUBUNITGGAAGTCMus musculusCrystal structure of a NF-kB heterodimer bound to the Ig/HIV-kB

1lei_ABNUCLEAR FACTOR NF-KAPPA-B P65 SUBUNITTGGGnnngTACAMus musculusThe kB DNA sequence from the HLV-LTR functions as an

1imh_CNUCLEAR FACTOR OF ACTIVATED T CELLS 5tTCCaHomo sapiensTonEBP/DNA COMPLEX
1imh_CDNUCLEAR FACTOR OF ACTIVATED T CELLS 5CnnnnntTCCaHomo sapiensTonEBP/DNA COMPLEX
1owr_NNuclear factor of activated T-cells, cytoplasmic 2GGAaHomo sapiensCRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA
1p7h_LNuclear factor of activated T-cells, cytoplasmic 2GGAaHomo sapiensStructure of NFAT1 bound as a dimer to the HIV-1

1p7h_LNNuclear factor of activated T-cells, cytoplasmic 2TTCCnAnnnGGGAHomo sapiensStructure of NFAT1 bound as a dimer to the HIV-1

1pzu_BNuclear factor of activated T-cells, cytoplasmic 2tGGAaHomo sapiensAn asymmetric NFAT1-RHR homodimer on a pseudo-palindromic, Kappa-B site
1pzu_BHIMNuclear factor of activated T-cells, cytoplasmic 2TCCAnnnnGGAAnTTCCAnnnAGGAAHomo sapiensAn asymmetric NFAT1-RHR homodimer on a pseudo-palindromic, Kappa-B site
1s9k_CDENuclear factor of activated T-cells, cytoplasmic 2TGAAnAnnTGTGTAAHomo sapiensCrystal Structure of Human NFAT1 and Fos-Jun on the IL-2

2as5_NNuclear factor of activated T-cells, cytoplasmic 2TTtTCCTHomo sapiensStructure of the DNA binding domains of NFAT and FOXP2

6l6l_ANuclear receptor related 1TGACCnAHomo sapiensStructural basis of NR4A2 homodimers binding to selective Nur-responsive elements
6l6l_ABNuclear receptor related 1AGGnCAnnnnnTGACCnAHomo sapiensStructural basis of NR4A2 homodimers binding to selective Nur-responsive elements
6l6q_ABNuclear receptor related 1TnACcTnTAnAGGTCAHomo sapiensStructural basis of NR4A2 homodimers binding to selective Nur-responsive elements
6l6q_BNuclear receptor related 1TGACCTnnAHomo sapiensStructural basis of NR4A2 homodimers binding to selective Nur-responsive elements
6lc1_ADNuclear receptor subfamily 4 group A member 1TGnCATnTGnnnGTnnATAnCAHomo sapiensStructural basis of NR4A1 bound to the human pituitary proopiomelanocortin

6lc1_GNuclear receptor subfamily 4 group A member 1gTAnaTAnnAHomo sapiensStructural basis of NR4A1 bound to the human pituitary proopiomelanocortin

6lc1_GJNuclear receptor subfamily 4 group A member 1TGnCATnTgnnnGTAnATAnnAHomo sapiensStructural basis of NR4A1 bound to the human pituitary proopiomelanocortin

5l0m_ANuclear receptor subfamily 5 group A member 2TAnCCTtGaHomo sapienshLRH-1 DNA Binding Domain - 12bp Oct4 promoter complex
5krb_BGNuclear receptor subfamily 6 group A member 1GGTCAaGGnCAMus musculusGCNF DNA Binding Domain - Oct4 DR0 Complex
5krb_GNuclear receptor subfamily 6 group A member 1TcnaGGnCAMus musculusGCNF DNA Binding Domain - Oct4 DR0 Complex
6r2v_ANuclear transcription factor Y subunit A-6CCAATccArabidopsis thalianaArabidopsis NF-Y/CCAAT-box complex
4awl_ANUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHACAATCAHomo sapiensThe NF-Y transcription factor is structurally and functionally a sequence

6y93_ABNucleoid occlusion proteinTATTTCCngGGAAATABacillus subtilis
strain 168
Crystal structure of the DNA-binding domain of the Nucleoid Occlusion

1e3o_COCTAMER-BINDING TRANSCRIPTION FACTOR 1CATGCATHomo sapiensCrystal structure of Oct-1 POU dimer bound to MORE
1gt0_CDOCTAMER-BINDING TRANSCRIPTION FACTOR 1CTTTGTnnGGATGCTAATHomo sapiens
Mus musculus
Crystal structure of a POU/HMG/DNA ternary complex
1hf0_ABOCTAMER-BINDING TRANSCRIPTION FACTOR 1CGTTTGAAAGGCAAATGHomo sapiensCrystal structure of the DNA-binding domain of Oct-1 bound to

1hf0_BOCTAMER-BINDING TRANSCRIPTION FACTOR 1TTTCAAAcGHomo sapiensCrystal structure of the DNA-binding domain of Oct-1 bound to

1z9c_AOrganic hydroperoxide resistance transcriptional regulatorAcnATTnAABacillus subtilis
strain 168
Crystal structure of OhrR bound to the ohrA promoter: Structure

1z9c_ABOrganic hydroperoxide resistance transcriptional regulatorTTnAATnGtnTAnnATTnAABacillus subtilis
strain 168
Crystal structure of OhrR bound to the ohrA promoter: Structure

1z9c_CDOrganic hydroperoxide resistance transcriptional regulatorTTnAATynwnTTnTnTnnABacillus subtilis
strain 168
Crystal structure of OhrR bound to the ohrA promoter: Structure

1z9c_EFOrganic hydroperoxide resistance transcriptional regulatorTTnAAnCnAnTTnRnTnnAABacillus subtilis
strain 168
Crystal structure of OhrR bound to the ohrA promoter: Structure



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