Database '3D-footprint 20210203' (DNA Binding Motifs 601-650)

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AccessionsNamesConsensusOrganismsDescription and notes
2kek_BLactose operon repressorTnGCnnTGCGEscherichia coli
strain K12
Solution structure of a dimer of LAC repressor DNA-binding domain

2pe5_ABLactose operon repressorGTGAGCGctCACAEscherichia coli
strain K12
Crystal Structure of the Lac Repressor bound to ONPG in

2pe5_BLactose operon repressorCGCTCACAAEscherichia coli
strain K12
Crystal Structure of the Lac Repressor bound to ONPG in

6cro_ALAMBDA CRO REPRESSORTATCACCnnnGGTGATAEnterobacteria phage lambda
Escherichia phage lambda
CRYSTAL STRUCTURE OF LAMBDA-CRO BOUND TO A CONSENSUS OPERATOR AT

3bdn_ALambda RepressorTcCaEnterobacteria phage lambda
Escherichia phage lambda
Crystal Structure of the Lambda Repressor
3bdn_ABLambda RepressorCcnnagtGGAEnterobacteria phage lambda
Escherichia phage lambda
Crystal Structure of the Lambda Repressor
2fio_ALate genes activatorTGTtgBacillus phage phi29Phage phi29 transcription regulator p4-DNA complex
2fio_ABLate genes activatorAaCtnnnnnnnnnnnnnnnnnnnnnnnTGTTBacillus phage phi29Phage phi29 transcription regulator p4-DNA complex
5c8e_AFLight-dependent transcriptional regulator CarHTGTAnnTstrain HB27 / ATCC BAA-163 / DSM 7039
Thermus thermophilus
Crystal structure of Thermus thermophilus CarH bound to adenosylcobalamin and

5c8e_BCLight-dependent transcriptional regulator CarHTACAnnnnnnTGACAstrain HB27 / ATCC BAA-163 / DSM 7039
Thermus thermophilus
Crystal structure of Thermus thermophilus CarH bound to adenosylcobalamin and

5c8e_CLight-dependent transcriptional regulator CarHTgTCastrain HB27 / ATCC BAA-163 / DSM 7039
Thermus thermophilus
Crystal structure of Thermus thermophilus CarH bound to adenosylcobalamin and

5c8e_EGLight-dependent transcriptional regulator CarHannnwnTgtstrain HB27 / ATCC BAA-163 / DSM 7039
Thermus thermophilus
Crystal structure of Thermus thermophilus CarH bound to adenosylcobalamin and

5hod_ALIM/homeobox protein Lhx4tnattaCHomo sapiensStructure of LHX4 transcription factor complexed with DNA
5hod_ADLIM/homeobox protein Lhx4CAATnAGnnGTAATnaHomo sapiensStructure of LHX4 transcription factor complexed with DNA
3brd_ALin-12 and glp-1 phenotype protein 1, isoform aTGGGaCaenorhabditis elegansCSL (Lag-1) bound to DNA with Lin-12 RAM peptide, P212121
3brf_ALin-12 and glp-1 phenotype protein 1, isoform aTGTGGGAACSL (Lag-1) bound to DNA with Lin-12 RAM peptide, C2221
2fo1_ALin-12 and glp-1 phenotype protein 1, isoform bTTCnCACCaenorhabditis elegansCrystal Structure of the CSL-Notch-Mastermind ternary complex bound to DNA
1ttu_Alin-12 And Glp-1 transcriptional regulatortGngACaenorhabditis elegansCrystal Structure of CSL bound to DNA
4nqa_ILiver X nuclear receptor betaAGGTCAHomo sapiensCrystal structure of liganded hRXR-alpha/hLXR-beta heterodimer on DNA
6a57_ALysine-specific demethylase REF6ACAGAGArabidopsis thalianaStructure of histone demethylase REF6 complexed with DNA
6jnl_ALysine-specific demethylase REF6aCAGAGArabidopsis thalianaREF6 ZnF2-4-NAC004 complex
6jnm_ALysine-specific demethylase REF6CTnTGTtArabidopsis thalianaREF6 ZnF2-4-NAC004-mC3 complex
6jnn_ANLysine-specific demethylase REF6AywGAknnnnTCTGTAArabidopsis thalianaREF6 ZnF2-4-NAC004-mC1 complex
6jnn_BLysine-specific demethylase REF6aACAGAArabidopsis thalianaREF6 ZnF2-4-NAC004-mC1 complex
5xxp_ALysR-type regulatory proteinCGTAAnnnTGCupriavidus necator
Cupriavidus necator (Alcaligenes eutrophus)
Crystal structure of CbnR_DBD-DNA complex
5xxp_ABLysR-type regulatory proteinTtACgnnnnncGTAAnnnTCupriavidus necator
Cupriavidus necator (Alcaligenes eutrophus)
Crystal structure of CbnR_DBD-DNA complex
1nlw_ABMAD PROTEINTGCACGTGCHomo sapiensCrystal structure of Mad-Max recognizing DNA
1nlw_DMAD PROTEINcgTGcHomo sapiensCrystal structure of Mad-Max recognizing DNA
1egw_ABMADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE ACTannnnTAgHomo sapiensCRYSTAL STRUCTURE OF MEF2A CORE BOUND TO DNA
5mhj_AMajor viral transcription factor ICP4aCGaHuman herpes simplex virus 1
Human herpesvirus 1 (strain 17) (HHV-1)
ICP4 DNA-binding domain, lacking intrinsically disordered region, in complex with

5mhj_ABMajor viral transcription factor ICP4aCGAtHuman herpes simplex virus 1
Human herpesvirus 1 (strain 17) (HHV-1)
ICP4 DNA-binding domain, lacking intrinsically disordered region, in complex with

5hlg_ACMarR family transcriptional regulatorCGATTnAGnnnncTnaATCGStaphylococcus epidermidis
strain ATCC 35984 / RP62A
Structure of reduced AbfR bound to DNA
5hlg_EMarR family transcriptional regulatorCTnaATCGcStaphylococcus epidermidis
strain ATCC 35984 / RP62A
Structure of reduced AbfR bound to DNA
5hlg_FHMarR family transcriptional regulatorCGATTnAgnnnnCTnAATCGStaphylococcus epidermidis
strain ATCC 35984 / RP62A
Structure of reduced AbfR bound to DNA
5hlh_ACMarR family transcriptional regulatorCGATTnAGnnnnCTnAATCGStaphylococcus epidermidis
strain ATCC 35984 / RP62A
Crystal structure of the overoxidized AbfR bound to DNA
5hlh_EMarR family transcriptional regulatorgCGATtnAGStaphylococcus epidermidis
strain ATCC 35984 / RP62A
Crystal structure of the overoxidized AbfR bound to DNA
5hlh_FHMarR family transcriptional regulatorCGATTnAGnnnnCTnAATCGStaphylococcus epidermidis
strain ATCC 35984 / RP62A
Crystal structure of the overoxidized AbfR bound to DNA
6q2b_ABMarR family transcriptional regulatorATTgTTrCnnnnGCAAyAATListeria monocytogenes serovar 1/2a
strain ATCC BAA-679 / EGD-e
Crystal Structure of Putative MarR Family Transcriptional Regulator from Listeria

6q2b_BMarR family transcriptional regulatorGCAACAATListeria monocytogenes serovar 1/2a
strain ATCC BAA-679 / EGD-e
Crystal Structure of Putative MarR Family Transcriptional Regulator from Listeria

1le8_AMATING-TYPE PROTEIN A-1TTACnTCASaccharomyces cerevisiaeCrystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA Complex
1le8_ABMATING-TYPE PROTEIN A-1GnAnnannTTACATCASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA Complex
1k61_ABCDMating-type protein alpha-2GCTTGTAAAnGAATTACASaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
MATALPHA2 HOMEODOMAIN BOUND TO DNA
1k61_BMating-type protein alpha-2TGTAntTnnnnnrCSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
MATALPHA2 HOMEODOMAIN BOUND TO DNA
1le8_BMating-type protein alpha-2GTAnnrSaccharomyces cerevisiae
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Crystal Structure of the MATa1/MATalpha2-3A Heterodimer Bound to DNA Complex
1nkp_EMax proteingCACgHomo sapiensCrystal structure of Myc-Max recognizing DNA
6byy_ABMEF2 CHIMERATAnnnnTAGHomo sapiensMEF2 CHIMERA/DNA Complex
6byy_CDMEF2 CHIMERATTnnnnnkAsHomo sapiensMEF2 CHIMERA/DNA Complex
6bz1_ABMEF2 CHIMERACTtnnnnaTaHomo sapiensMEF2 Chimera D83V mutant/DNA complex
6bz1_CDMEF2 CHIMERAcTAnnnntAAHomo sapiensMEF2 Chimera D83V mutant/DNA complex
6wc2_ABOMEF2 Chimera,Myocyte-specific enhancer factor 2B,Myocyte-specific enhancer factor 2ACTAnnnnnGGAAAAngCHomo sapiensCrystal Structure of a Ternary MEF2 Chimera/NKX2-5/myocardin enhancer DNA Complex


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