Database '3D-footprint 20210203' (DNA Binding Motifs 501-550)

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AccessionsNamesConsensusOrganismsDescription and notes
3rkq_ABHomeobox protein Nkx-2.5TCAAGAGnnnnnCACTTCAHomo sapiensNKX2.5 Homeodomain dimer bound to ANF-242 DNA
3rkq_BHomeobox protein Nkx-2.5CTCTtGAHomo sapiensNKX2.5 Homeodomain dimer bound to ANF-242 DNA
4s0h_FHomeobox protein Nkx-2.5aAGtGHomo sapiensTBX5 DB, NKX2.5 HD, ANF DNA Complex
6wc5_NHomeobox protein Nkx-2.5CnCTTTHomo sapiensCrystal Structure of a Ternary MEF2B/NKX2-5/myocardin enhancer DNA Complex
5flv_IHOMEOBOX PROTEIN NKX-2.5, T-BOX TRANSCRIPTION FACTOR TBX5CACnnTTGAAGnGgMus musculusCrystal structure of NKX2-5 and TBX5 bound to the Nppa

6pax_AHOMEOBOX PROTEIN PAX-6ACGcAnnCGTGCHomo sapiensCRYSTAL STRUCTURE OF THE HUMAN PAX-6 PAIRED DOMAIN-DNA COMPLEX REVEALS

1lfu_Phomeobox protein PBX1aaTnATMus musculusNMR Solution Structure of the Extended PBX Homeodomain Bound to

6fqp_ABHomeobox protein TGIF1TGACAgCtGTCAHomo sapiensCrystal structure of TALE homeobox domain transcription factor TGIF1 with

6fqp_BHomeobox protein TGIF1ctGTCAHomo sapiensCrystal structure of TALE homeobox domain transcription factor TGIF1 with

6fqq_ABHomeobox protein TGIF1tGACAgnTGTCAHomo sapiensCrystal structure of TALE homeobox domain transcription factor TGIF1 double

6fqq_DEHomeobox protein TGIF1TGACAGCTGKCAHomo sapiensCrystal structure of TALE homeobox domain transcription factor TGIF1 double

6fqq_EHomeobox protein TGIF1tGACAgHomo sapiensCrystal structure of TALE homeobox domain transcription factor TGIF1 double

1nk2_PHOMEOBOX PROTEIN VNDGTcaADrosophila melanogasterVND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, 20 STRUCTURES
1nk3_PHOMEOBOX PROTEIN VNDCAnTTGaCDrosophila melanogasterVND/NK-2 HOMEODOMAIN/DNA COMPLEX, NMR, MINIMIZED AVERAGE STRUCTURE
4j19_ABHomeobox-containing protein 1GGTTAGGGTTAGHomo sapiensStructure of a novel telomere repeat binding protein bound to

4j19_BHomeobox-containing protein 1CTAACCHomo sapiensStructure of a novel telomere repeat binding protein bound to

3a01_ABHomeodomain-containing proteinTTAATTAATTGDrosophila melanogasterCrystal structure of Aristaless and Clawless homeodomains bound to DNA
3a01_EHomeodomain-containing proteinTaATTGDrosophila melanogasterCrystal structure of Aristaless and Clawless homeodomains bound to DNA
1zq3_PHomeotic bicoid proteingGGAtTAGDrosophila melanogasterNMR Solution Structure of the Bicoid Homeodomain Bound to the

1ahd_PHomeotic protein antennapediaAnnnCATtAGADrosophila melanogaster
Drosophila subobscura
DETERMINATION OF THE NMR SOLUTION STRUCTURE OF AN ANTENNAPEDIA HOMEODOMAIN-DNA

4xic_AHomeotic protein antennapediaCTAAtgDrosophila melanogasterANTPHD WITH 15BP di-thioate modified DNA DUPLEX
4xid_AHomeotic protein antennapediaCcaTTAGDrosophila melanogasterAntpHD with 15bp DNA duplex
5jlw_DHomeotic protein antennapediaCATTAGDrosophila melanogasterAntpHD with 15bp DNA duplex R-monothioated at Cytidine-8
5jlx_AHomeotic protein antennapediaGCATTAGDrosophila melanogasterAntpHD with 15bp DNA duplex S-monothioated at Cytidine-8
1ig7_AHomeotic protein Msx-1cTAATnGMus musculusMsx-1 Homeodomain/DNA Complex Structure
2r5y_AHomeotic protein Sex combs reducedTTTAtgGDrosophila melanogasterStructure of Scr/Exd complex bound to a consensus Hox-Exd site
2r5y_ABHomeotic protein Sex combs reducedTGATTTAwgGDrosophila melanogasterStructure of Scr/Exd complex bound to a consensus Hox-Exd site
2r5z_ABHomeotic protein Sex combs reducedAGATTAATcGGDrosophila melanogasterStructure of Scr/Exd complex bound to a DNA sequence derived

4cyc_AHOMEOTIC PROTEIN ULTRABITHORAXATAaDrosophila melanogasterCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND

4cyc_ABHOMEOTIC PROTEIN ULTRABITHORAXgTGAatTADrosophila melanogasterCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND

4uus_ABHOMEOTIC PROTEIN ULTRABITHORAXcnATATATCADrosophila melanogasterCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
4uus_EHOMEOTIC PROTEIN ULTRABITHORAXTTATGGDrosophila melanogasterCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE UBDA MOTIF
6jpi_ABCDHTH cro/C1-type domain-containing proteinTAACCnTTnACGTTAnnCGTTAPseudomonas aeruginosa
strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1
Crystal structure of PA4674 in complex with its operator DNA

4ihs_BHTH-type transcriptional regulator BenMGGTATATAAAcinetobacter baylyi
strain ATCC 33305 / BD413 / ADP1
Crystal Structure of BenM_DBD/catB site 1 DNA Complex
4iht_CDHTH-type transcriptional regulator BenMATAcnnnnnnAGTaTTAcinetobacter baylyi
strain ATCC 33305 / BD413 / ADP1
Crystal Structure of BenM_DBD/benA site 1 DNA Complex
4iht_DHTH-type transcriptional regulator BenMAGTATTnnTAcinetobacter baylyi
strain ATCC 33305 / BD413 / ADP1
Crystal Structure of BenM_DBD/benA site 1 DNA Complex
4wls_ABHTH-type transcriptional regulator CueRGnnnCCnCnnTTTGGnnnGEscherichia coli
strain K12
Crystal structure of the metal-free (repressor) form of E. Coli

4wls_BHTH-type transcriptional regulator CueRCTGGannGEscherichia coli
strain K12
Crystal structure of the metal-free (repressor) form of E. Coli

4wlw_AHTH-type transcriptional regulator CueRCcntCCAGEscherichia coli
strain K12
CRYSTAL STRUCTURE OF THE AG(I) (ACTIVATOR) FORM OF E. COLI

4r4e_BHTH-type transcriptional regulator GlnRtTntnACBacillus subtilis
strain 168
Structure of GlnR-DNA complex
3dnv_AB
3dnv_B
HTH-type transcriptional regulator hipBTATcEscherichia coli
strain K12
MDT Protein
3zkc_AHTH-TYPE TRANSCRIPTIONAL REGULATOR SINRGTTctBacillus subtilis
strain 168
Crystal structure of the master regulator for biofilm formation SinR

3zkc_ABHTH-TYPE TRANSCRIPTIONAL REGULATOR SINRGTTCtnnnnGnGAaCBacillus subtilis
strain 168
Crystal structure of the master regulator for biofilm formation SinR

2xro_ABEFHTH-TYPE TRANSCRIPTIONAL REGULATOR TTGVTnTCAnnnnnTGCTAnnnnnTACCGnnnnnCGAnTPseudomonas putida
strain DOT-T1E
Crystal structure of TtgV in complex with its DNA operator
2xro_EHTH-TYPE TRANSCRIPTIONAL REGULATOR TTGVCGgtAPseudomonas putida
strain DOT-T1E
Crystal structure of TtgV in complex with its DNA operator
4u0y_ABCDHTH-type transcriptional repressor YvoAGTGGycTAgaCCACBacillus subtilis
strain 168
Crystal structure of the DNA-binding domains of YvoA in complex

4u0y_BHTH-type transcriptional repressor YvoATGGyaTABacillus subtilis
strain 168
Crystal structure of the DNA-binding domains of YvoA in complex

4wwc_ABHTH-type transcriptional repressor YvoATGGTCTAnACCaBacillus subtilis
strain 168
Crystal structure of full length YvoA in complex with palindromic

4wwc_BHTH-type transcriptional repressor YvoACrrnnnnnTAnACCaBacillus subtilis
strain 168
Crystal structure of full length YvoA in complex with palindromic

4bnc_AHUMAN ETV1cTTCCGHomo sapiensCrystal structure of the DNA-binding domain of human ETV1 complexed



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