Database '3D-footprint 20210203' (DNA Binding Motifs 451-500)

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AccessionsNamesConsensusOrganismsDescription and notes
6cim_DNHigh mobility group protein B1AAgtHomo sapiensPre-Reaction Complex, RAG1(E962Q)/2-nicked/intact 12/23RSS complex in Mn2+
6oem_BCHHigh mobility group protein B1GTTaAGnnnnnnannmCTHomo sapiensCryo-EM structure of mouse RAG1/2 PRC complex (DNA0)
6oen_ADNHigh mobility group protein B1GTnnnnnnnnnnnctnnnnnTGHomo sapiensCryo-EM structure of mouse RAG1/2 PRC complex (DNA1)
6oeo_ABNHigh mobility group protein B1GnnnnnnnnnnnTGTGHomo sapiensCryo-EM structure of mouse RAG1/2 NFC complex (DNA1)
1qrv_AHIGH MOBILITY GROUP PROTEIN DgATAncDrosophila melanogasterCRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA
1qrv_ABHIGH MOBILITY GROUP PROTEIN DtATcnCDrosophila melanogasterCRYSTAL STRUCTURE OF THE COMPLEX OF HMG-D AND DNA
3nm9_DGJHigh mobility group protein DCGnnngATannnCGDrosophila melanogasterHMGD(M13A)-DNA complex
5egb_AHistone-lysine N-methyltransferase PRDM9tGGCTAGGGAGGCHomo sapiensHuman PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA

5eh2_FHistone-lysine N-methyltransferase PRDM9mCTCCCTAGCCaHomo sapiensHuman PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA

5ei9_FHistone-lysine N-methyltransferase PRDM9tGGCTAGGGAGGCaHomo sapiensHuman PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA

5zdz_CNHMGB1 A-B boxCTnnCTnnnnACTTnnnnnnnnnnnnnGTMus musculusHairpin Forming Complex, RAG1/2-Nicked 12RSS/23RSS complex in Ca2+
5ze0_NHMGB1 A-B boxCTnnnnnnnnacTTMus musculusHairpin Forming Complex, RAG1/2-Nicked(with Dideoxy) 12RSS/23RSS complex in Mg2+
5ze2_NHMGB1 A-B boxCTnnnnnnnnacTTMus musculusHairpin Complex, RAG1/2-hairpin 12RSS/23RSS complex in 5mM Mn2+ for 2

1vtn_CHNF-3/FORK HEAD DNA-RECOGNITION MOTIFCTannTCAAHomo sapiensCO-CRYSTAL STRUCTURE OF THE HNF-3/FORK HEAD DNA-RECOGNITION MOTIF RESEMBLES HISTONE

5zjq_AHomeobox protein abdominal-BTTTATGADrosophila melanogasterStructure of AbdB/Exd complex bound to a 'Red14' DNA sequence
5zjq_ABHomeobox protein abdominal-BATGATTTATGADrosophila melanogasterStructure of AbdB/Exd complex bound to a 'Red14' DNA sequence
5zjr_AHomeobox protein abdominal-BTCGTAAADrosophila melanogasterStructure of AbdB/Exd complex bound to a 'Magenta14' DNA sequence
5zjr_ABHomeobox protein abdominal-BTnmTATATCADrosophila melanogasterStructure of AbdB/Exd complex bound to a 'Magenta14' DNA sequence
5zjs_ABHomeobox protein abdominal-BATGAtTaADrosophila melanogasterStructure of AbdB/Exd complex bound to a 'Blue14' DNA sequence
5zjt_ABHomeobox protein abdominal-BTTATTTATCATDrosophila melanogasterStructure of AbdB/Exd complex bound to a 'Black14' DNA sequence
5zjt_EHomeobox protein abdominal-BTTTATADrosophila melanogasterStructure of AbdB/Exd complex bound to a 'Black14' DNA sequence
3a01_FHomeobox protein aristalessTTAAnnAADrosophila melanogasterCrystal structure of Aristaless and Clawless homeodomains bound to DNA
3lnq_AHomeobox protein aristalessTTATTAADrosophila melanogasterStructure of Aristaless homeodomain in complex with DNA
5lux_KHomeobox protein CDX-1tnnTAAaHomo sapiensHomeobox transcription factor CDX1 bound to methylated DNA
5lty_KHomeobox protein CDX-2tnnTAAaHomo sapiensHomeobox transcription factor CDX2 bound to methylated DNA
6es2_KHomeobox protein CDX-2tTTatngHomo sapiensStructure of CDX2-DNA(CAA)
6es3_KHomeobox protein CDX-2rTnGTAAwHomo sapiensStructure of CDX2-DNA(TCG)
4rdu_AHomeobox protein DLX-5CTAAtnAHomo sapiensCrystal structure of a distal-less homeobox protein 5 (Dlx5) from

2r5z_BHomeobox protein extradenticleaGAtDrosophila melanogasterStructure of Scr/Exd complex bound to a DNA sequence derived

4cyc_BHOMEOBOX PROTEIN EXTRADENTICLEwnTCAcDrosophila melanogasterCRYSTAL STRUCTURE OF A UBX-EXD-DNA COMPLEX INCLUDING THE HEXAPEPTIDE AND

5zjs_BHomeobox protein extradenticleatGADrosophila melanogasterStructure of AbdB/Exd complex bound to a 'Blue14' DNA sequence
2me6_AHomeobox protein GBX-1aCTAATTAgHomo sapiensNMR Structure of the homeodomain transcription factor Gbx1 from Homo

2ld5_AHomeobox protein Hox-A13AAATAAaATMus musculusSolution NMR-derived complex structure of Hoxa13 DNA binding domain bound

1puf_AHomeobox protein Hox-A9tTACnaCMus musculusCrystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
1puf_ABHomeobox protein Hox-A9ATGATwTACnACMus musculus
Homo sapiens
Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
5edn_AJHomeobox protein Hox-B13ATAAAnnnCnnTTnnnnTTTATHomo sapiensStructure of HOXB13-DNA(TCG) complex
5edn_BGHomeobox protein Hox-B13gnnnnnGTAAAnnnnnGnnnnnntnaCTAGHomo sapiensStructure of HOXB13-DNA(TCG) complex
5edn_JHomeobox protein Hox-B13TnGTAAAHomo sapiensStructure of HOXB13-DNA(TCG) complex
5eea_BHomeobox protein Hox-B13tTTaTTGnGHomo sapiensStructure of HOXB13-DNA(CAA) complex
5ef6_JHomeobox protein Hox-B13TtTaHomo sapiensStructure of HOXB13 complex with methylated DNA
5eg0_BHomeobox protein Hox-B13tngTAAAHomo sapiensHOXB13-MEIS1 heterodimer bound to DNA
5ego_BHomeobox protein Hox-B13tnnTAaaHomo sapiensHOXB13-MEIS1 heterodimer bound to methylated DNA
5no6_ANHomeobox protein Hox-B13GGAATgcnATAaAHomo sapiensTEAD4-HOXB13 complex bound to DNA
5no6_BIHomeobox protein Hox-B13GAATGynATAAmHomo sapiensTEAD4-HOXB13 complex bound to DNA
4xrs_BIHomeobox protein Meis1ganmngatAHomo sapiensHeterodimeric complex of transcription factors MEIS1 and DLX3 on specific

5ego_ABHomeobox protein Meis1TGACAgnTTTAnnaHomo sapiensHOXB13-MEIS1 heterodimer bound to methylated DNA
4xrm_ABHomeobox protein Meis2TGACAATTGTCAHomo sapienshomodimer of TALE type homeobox transcription factor MEIS1 complexes with

4xrm_BHomeobox protein Meis2TTGTCAHomo sapienshomodimer of TALE type homeobox transcription factor MEIS1 complexes with

5bng_AHomeobox protein Meis2TgACAHomo sapiensmonomer of TALE type homeobox transcription factor MEIS1 complexes with

5eg0_ABHomeobox protein Meis2TnGTAAAnnTGTCAHomo sapiensHOXB13-MEIS1 heterodimer bound to DNA


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