Database '3D-footprint 20161221' (DNA Binding Motifs 1-50)

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AccessionsNamesConsensusOrganismsDescription and notes
2or1_L434 REPRESSORTnTnTTGTAEscherichia virus Lambda
Phage 434
RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE

2or1_LR434 REPRESSORTACAAnnTnTnTTGTAEscherichia virus Lambda
Phage 434
RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE

2i13_AAartCCCGGGCTTTTCCCTACAMus musculusAart, a six finger zinc finger designed to recognize ANN

2o93_LMOactor of activated T-cells, cytoplasmic 2GGGAnnTTCCGnnnnnnnnnTTCCHomo sapiensCrystal structure of NFAT bound to the HIV-1 LTR tandem

2o93_Mactor of activated T-cells, cytoplasmic 2tTCCgHomo sapiensCrystal structure of NFAT bound to the HIV-1 LTR tandem

1u8b_AAda polyproteinwTnTannnTEscherichia coli
strain K12
Crystal structure of the methylated N-ADA/DNA complex
1zgw_AAda polyproteintTGCGnntTAATEscherichia coli
strain K12
NMR structure of E. Coli Ada protein in complex with

3w6v_AAdpATGgCGgStreptomyces griseusCrystal structure of the DNA-binding domain of AdpA, the global

3qoq_ABCDAlginate and motility regulator ZGGCGnnnTGCCAAPseudomonas aeruginosa
strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1
Crystal Structure of the Transcription Factor AmrZ in Complex with

4ond_AAncestral SR2 Helix MutantTGacsynthetic constructAncestral Steroid Receptor 2 DBD helix mutant - ERE DNA

4ond_ABAncestral SR2 Helix MutantGGTnAnnnTGACAsynthetic constructAncestral Steroid Receptor 2 DBD helix mutant - ERE DNA

4ond_EFAncestral SR2 Helix MutantAGGTCAnnnTGACCsynthetic constructAncestral Steroid Receptor 2 DBD helix mutant - ERE DNA

4ov7_ABAncestral Steroid Receptor 2 DBD helix mutanttnnCAnnnTGynCsynthetic constructAncestral Steroid Receptor 2 DBD helix mutant - SRE DNA

4oor_ABAncestral Steroid Receptor 2 DNA binding domainGnACAnnnTGnnAsynthetic constructAncestral Steroid Receptor 2 DNA binding domain in complex with

4oor_EF
4ov7_EF
Ancestral Steroid Receptor 2 DNA binding domain, Ancestral Steroid Receptor

TnnnCAnnnTGTnCsynthetic constructAncestral Steroid Receptor 2 DNA binding domain in complex with

5cbx_ABAncGR DNA Binding DomainGnACAnnnTGnnCHomo sapiens
unidentified
AncGR DNA Binding Domain - (+)GRE Complex
5cbx_EAncGR DNA Binding DomainTGtncHomo sapiens
unidentified
AncGR DNA Binding Domain - (+)GRE Complex
5cbx_EFAncGR DNA Binding DomainGnaCAnnnTGtnAHomo sapiens
unidentified
AncGR DNA Binding Domain - (+)GRE Complex
5cby_ABAncGR2 DNA Binding DomainGnnCannnTGtnCHomo sapiens
unidentified
AncGR2 DNA Binding Domain - (+)GRE Complex
5cby_BAncGR2 DNA Binding DomainTGtncHomo sapiens
unidentified
AncGR2 DNA Binding Domain - (+)GRE Complex
5cbz_ABAncMR DNA Binding DomainGnaCannnTGnnCHomo sapiens
unidentified
AncMR DNA Binding Domain - (+)GRE Complex
5cbz_EAncMR DNA Binding DomaingnaCAHomo sapiens
unidentified
AncMR DNA Binding Domain - (+)GRE Complex
5cbz_EFAncMR DNA Binding DomainGnaCAnnnTGtnCHomo sapiens
unidentified
AncMR DNA Binding Domain - (+)GRE Complex
4oln_ABAncSR1GGTCAnnnTGACCsynthetic constructAncestral Steroid Receptor 1 in complex with estrogen response element

4oln_BAncSR1tgACCsynthetic constructAncestral Steroid Receptor 1 in complex with estrogen response element

5cc0_ABAncSR2 DNA Binding DomaintckncssnnngCgHomo sapiens
synthetic construct
AncSR2 - TSLP nGRE complex
1r4i_ABAndrogen receptortGnACtnnnTGTRattus norvegicusCrystal Structure of Androgen Receptor DNA-Binding Domain Bound to a

9ant_BANTENNAPEDIA HOMEODOMAINCTAATAGDrosophila melanogasterANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX
4yg1_ABCDAntitoxin HipBTATnCGnnnnnnGnATAnnnnnnnnnnTAnCAtnnnnnnnGATAEscherichia coli
strain K12
HipB-O1-O2 complex/P21212 crystal form
4yg1_BAntitoxin HipBTATCEscherichia coli
strain K12
HipB-O1-O2 complex/P21212 crystal form
4yg4_ABCDAntitoxin HipBTCCcnnnnnnngTATEscherichia coli
strain K12
HipB-O1-O1* complex
4yg4_BAntitoxin HipBTCCCEscherichia coli
strain K12
HipB-O1-O1* complex
4yg7_BCDEGKAntitoxin HipBTAnCCnnnnngGATAnnnnnnnnnnTAnnCcnnnnnGGGATEscherichia coli
strain K12
Structure of FL autorepression promoter complex
4z58_AAntitoxin HipBTATcEscherichia coli
strain K12
HipB-O3 20mer complex
4z59_AAntitoxin HipBTATcEscherichia coli
strain K12
HipB-O4 20mer complex
4z5c_ABAntitoxin HipBTATCCCnnnnnnCGGATAEscherichia coli
strain K12
HipB-O3 21mer complex
4z5c_BAntitoxin HipBGGGATAEscherichia coli
strain K12
HipB-O3 21mer complex
4z5d_ABAntitoxin HipBTAtCCrnnnnnncGGwTAEscherichia coli
strain K12
HipB-O4 21mer complex
4z5d_BAntitoxin HipBtAtCCEscherichia coli
strain K12
HipB-O4 21mer complex
5k98_BPAntitoxin HipBTATCCCnnnnnnGGGATAEscherichia coli
Escherichia coli MP020980.2
Structure of HipA-HipB-O2-O3 complex
5k98_PAntitoxin HipBGGGaTaEscherichia coli
Escherichia coli MP020980.2
Structure of HipA-HipB-O2-O3 complex
1a02_FJNAP-1 FRAGMENT FOSTGAAnCAanttTTCCHomo sapiensSTRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND

4egy_ABArabinose metabolism transcriptional repressorTGtTCGTACABacillus subtilis
strain 168
Crystal Structure of AraR(DBD) in complex with operator ORA1
4egy_BArabinose metabolism transcriptional repressortCnnACABacillus subtilis
strain 168
Crystal Structure of AraR(DBD) in complex with operator ORA1
4egz_ABArabinose metabolism transcriptional repressormTGTnnATnnACABacillus subtilis
strain 168
Crystal Structure of AraR(DBD) in complex with operator ORR3
4egz_BArabinose metabolism transcriptional repressorTnnACATBacillus subtilis
strain 168
Crystal Structure of AraR(DBD) in complex with operator ORR3
4h0e_ABArabinose metabolism transcriptional repressorTGtaCGgACABacillus subtilis
strain 168
Crystal Structure of mutant ORR3 in complex with NTD of

4h0e_BArabinose metabolism transcriptional repressorCCnnACATBacillus subtilis
strain 168
Crystal Structure of mutant ORR3 in complex with NTD of

5d4r_AArabinose metabolism transcriptional repressorCTnaCABacillus subtilis
strain 168
Crystal Structure of AraR(DBD) in complex with operator ORE1


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