Database '3D-footprint 20200120' (DNA Binding Motifs 1-50)

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AccessionsNamesConsensusOrganismsDescription and notes
2or1_L434 REPRESSORTACAAnAnAEscherichia virus Lambda
Phage 434
RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE

2or1_LR434 REPRESSORTACAAnnTnTnTTGTAEscherichia virus Lambda
Phage 434
RECOGNITION OF A DNA OPERATOR BY THE REPRESSOR OF PHAGE

2i13_AAartTGTAGGGAAAAGCCCGGGMus musculusAart, a six finger zinc finger designed to recognize ANN

2o93_LMOactor of activated T-cells, cytoplasmic 2GGAAnnnnnnnnnCGGAAnnTCCCHomo sapiensCrystal structure of NFAT bound to the HIV-1 LTR tandem

2o93_Mactor of activated T-cells, cytoplasmic 2cGGAaHomo sapiensCrystal structure of NFAT bound to the HIV-1 LTR tandem

1u8b_AAda polyproteinAnnntAaATEscherichia coli
strain K12
Crystal structure of the methylated N-ADA/DNA complex
1zgw_AAda polyproteinATTAannCGCAaEscherichia coli
strain K12
NMR structure of E. Coli Ada protein in complex with

5x5l_AEAdeRAAnnTGTGGnnnAaGTGnGGAcinetobacter baumanniiCrystal structure of response regulator AdeR DNA binding domain in

5x5l_BHAdeRGTgTGnnnnAnnnnTGAcinetobacter baumanniiCrystal structure of response regulator AdeR DNA binding domain in

5x5l_HAdeRcCACACnTTAcinetobacter baumanniiCrystal structure of response regulator AdeR DNA binding domain in

3w6v_AAdpAcCGcCAStreptomyces griseusCrystal structure of the DNA-binding domain of AdpA, the global

3qoq_ABCDAlginate and motility regulator ZGGCGnnnTGCCAAPseudomonas aeruginosa
strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1
Crystal Structure of the Transcription Factor AmrZ in Complex with

4ond_AAncestral SR2 Helix MutantTGacsynthetic constructAncestral Steroid Receptor 2 DBD helix mutant - ERE DNA

4ond_ABAncestral SR2 Helix MutantTGTCAnnnTnACCsynthetic constructAncestral Steroid Receptor 2 DBD helix mutant - ERE DNA

4ond_EFAncestral SR2 Helix MutantAGGTcAnnnTgACCsynthetic constructAncestral Steroid Receptor 2 DBD helix mutant - ERE DNA

4ov7_ABAncestral Steroid Receptor 2 DBD helix mutantGntCAnnnTGnnasynthetic constructAncestral Steroid Receptor 2 DBD helix mutant - SRE DNA

4ov7_EFAncestral Steroid Receptor 2 DBD helix mutantTnnnCAnnnTGTnCsynthetic constructAncestral Steroid Receptor 2 DBD helix mutant - SRE DNA

4oor_ABAncestral Steroid Receptor 2 DNA binding domainGnyCAnnnTGnnasynthetic constructAncestral Steroid Receptor 2 DNA binding domain in complex with

4oor_EFAncestral Steroid Receptor 2 DNA binding domainTnnnCAnnnTGTnCsynthetic constructAncestral Steroid Receptor 2 DNA binding domain in complex with

5cbx_ABAncGR DNA Binding DomainGnnCAnnnTGTnCHomo sapiens
unidentified
AncGR DNA Binding Domain - (+)GRE Complex
5cbx_BAncGR DNA Binding DomaingnaCAHomo sapiens
unidentified
AncGR DNA Binding Domain - (+)GRE Complex
5cbx_EFAncGR DNA Binding DomaintnaCAnnnTGynCHomo sapiens
unidentified
AncGR DNA Binding Domain - (+)GRE Complex
5cby_ABAncGR2 DNA Binding DomainGnnCannnTGtnCHomo sapiens
unidentified
AncGR2 DNA Binding Domain - (+)GRE Complex
5cby_BAncGR2 DNA Binding DomaingnaCAHomo sapiens
unidentified
AncGR2 DNA Binding Domain - (+)GRE Complex
5cbz_ABAncMR DNA Binding DomainGnnCAnnntGtnCHomo sapiens
unidentified
AncMR DNA Binding Domain - (+)GRE Complex
5cbz_EAncMR DNA Binding DomainTGtncHomo sapiens
unidentified
AncMR DNA Binding Domain - (+)GRE Complex
5cbz_EFAncMR DNA Binding DomainGnaCAnnnTGknCHomo sapiens
unidentified
AncMR DNA Binding Domain - (+)GRE Complex
4oln_ABAncSR1GGTCannntGACCsynthetic constructAncestral Steroid Receptor 1 in complex with estrogen response element

4oln_BAncSR1tgACCsynthetic constructAncestral Steroid Receptor 1 in complex with estrogen response element

5cc0_ABAncSR2 DNA Binding DomaincGcnnnykgnmgaHomo sapiens
synthetic construct
AncSR2 - TSLP nGRE complex
1r4i_ABAndrogen receptortGnACtnnnTGTRattus norvegicusCrystal Structure of Androgen Receptor DNA-Binding Domain Bound to a

9ant_BANTENNAPEDIA HOMEODOMAINCTATTAGDrosophila melanogasterANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX
6chv_ACAntitoxin HigATnnTACAnnnnnTGTAanaProteus vulgarisProteus vulgaris HigA antitoxin bound to DNA
6chv_BDAntitoxin HigATACAnnnnnTGTannAProteus vulgarisProteus vulgaris HigA antitoxin bound to DNA
6chv_DAntitoxin HigATGTAAnAProteus vulgarisProteus vulgaris HigA antitoxin bound to DNA
6chv_GHAntitoxin HigATACAnnnnnTGTAnnAProteus vulgarisProteus vulgaris HigA antitoxin bound to DNA
4yg1_ABCDAntitoxin HipBTATnCGnnnnnnGnAYannnnnnnnnnTAnCmtnnnnnnnGATAEscherichia coli
strain K12
HipB-O1-O2 complex/P21212 crystal form
4yg1_BAntitoxin HipBTATCEscherichia coli
strain K12
HipB-O1-O2 complex/P21212 crystal form
4yg4_ABCDAntitoxin HipBTCCcnnnnnnnGTATEscherichia coli
strain K12
HipB-O1-O1* complex
4yg4_BAntitoxin HipBGGGAEscherichia coli
strain K12
HipB-O1-O1* complex
4yg7_BCDEGKAntitoxin HipBTAnCCnnnnngGATAnnnnnnnnnnTAnnCcnnnnnGGGATEscherichia coli
strain K12
Structure of FL autorepression promoter complex
4z58_AAntitoxin HipBTATcEscherichia coli
strain K12
HipB-O3 20mer complex
4z59_AAntitoxin HipBTATcEscherichia coli
strain K12
HipB-O4 20mer complex
4z5c_ABAntitoxin HipBTATCCCnnnnnnCGGATAEscherichia coli
strain K12
HipB-O3 21mer complex
4z5c_BAntitoxin HipBGGGATAEscherichia coli
strain K12
HipB-O3 21mer complex
4z5d_ABAntitoxin HipBTAtCCnnnnnnncGGATAEscherichia coli
strain K12
HipB-O4 21mer complex
4z5d_BAntitoxin HipBtAtCCEscherichia coli
strain K12
HipB-O4 21mer complex
5k98_BPAntitoxin HipBTATCCCnnnnnnGGGATAEscherichia coli
strain K12
Structure of HipA-HipB-O2-O3 complex
5k98_PAntitoxin HipBtAtCCCEscherichia coli
strain K12
Structure of HipA-HipB-O2-O3 complex


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