Database 'JASPAR 2018' (DNA Binding Motifs 1801-1850)

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If you want to search for a protein sequence or a DNA motif use the Sequence Search Form.


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AccessionsNamesConsensusOrganismsDescription and notes
MA0373.1RPN4gGTGGCGSaccharomyces cerevisiaePBM, CSA and/or DIP-chip
PF0129.1RRAGTTGTrrAGTTGTphylogenetic
PF0146.1RRCCGTTArrCCGTTAphylogenetic
MA0073.1RREB1MCMCmAMmCAmCMmCmmmsmHomo sapiensSELEX
MA0374.1RSC3CGCGcssSaccharomyces cerevisiaePBM, CSA and/or DIP-chip
MA0375.1RSC30csCGCGCSSaccharomyces cerevisiaePBM, CSA and/or DIP-chip
PF0036.1RTAAACArTAAACAphylogenetic
MA0376.1RTG3rkmkkakCACGTGmyyrvwcSaccharomyces cerevisiaePBM
PF0107.1RTTTNNNYTGGMrTTTkywYTGGmphylogenetic
MA0002.1RUNX1wwyTGyGGTwwHomo sapiens
Mus musculus
SELEX
MA0002.2RUNX1ktyTGTGGttwHomo sapiens
Mus musculus
ChIP-seq
MA0511.1RUNX2kkkktyTGTGGTttkHomo sapiensChIP-seq
MA0511.2RUNX2wAACCRCAaHomo sapiensHT-SELEX
MA0684.1RUNX3wAACCrCAaaHomo sapiensHT-SELEX
MA1184.1RVE1aaawAAATATCTwaArabidopsis thalianaDAP-seq
MA0202.1RxyTAATTrDrosophila melanogasterbacterial 1-hybrid
MA0512.1RxraCArAGKTCAgdMus musculusChIP-seq
MA0512.2RxragrGGTCAAAGGTCAMus musculusHT-SELEX
PB0057.1Rxra_1tshykTGACCCCdyrmtMus musculusuniversal protein binding microarray (PBM)
PB0161.1Rxra_2kcrcrwAGktyrtwmkMus musculusuniversal protein binding microarray (PBM)
MA0074.1RXRA::VDRRGGTCAwcGrGTTCAHomo sapiensSELEX
MA0855.1RXRBrRGGTCAAAGGTCAHomo sapiensHT-SELEX
MA0856.1RXRGgrGGTCAAAGGTCAHomo sapiensHT-SELEX
PF0151.1RYAAAKNNNNNNTTGWRyAAAkrkbycwTTGwphylogenetic
PF0128.1RYCACNNRNNRNCAGryCACmrrrkrgCAGphylogenetic
PF0133.1RYTAAWNNNTGAYrYTAAwkdyTGAyphylogenetic
PF0053.1RYTGCNNRGNAACGTTGCywrGcAACphylogenetic
PF0087.1RYTGCNWTGGNRGyTGCcATGGcrphylogenetic
PF0016.1RYTTCCTGryTTCCTGphylogenetic
PF0003.1SCGGAAGYSCGGAAGyphylogenetic
MA0193.1schlankCyACyAaDrosophila melanogasterbacterial 1-hybrid
MA0203.1ScryTAATKADrosophila melanogasterbacterial 1-hybrid
MA0743.1SCRT1rwKCAACAGGTGktyHomo sapiensHT-SELEX
MA0744.1SCRT2rwGCAACAGGTGgHomo sapiensHT-SELEX
MA0243.1sdgwmATTycwmrrDrosophila melanogasterDNaseI footprinting
MA0584.1SEP1hwtwCCAwWwwTrGwAakArabidopsis thalianaSELEX
MA0563.1SEP3tCywTTTTTGGArabidopsis thalianaChIP-seq
MA0377.1SFL1wmrmraAtmGAAGaaawawwwSaccharomyces cerevisiaePBM
MA0378.1SFP1wywrdrAAAAwTTTTyywykgSaccharomyces cerevisiaePBM
PB0058.1Sfpi1_1ydawgvGGAAsTdmMus musculusuniversal protein binding microarray (PBM)
PB0162.1Sfpi1_2maawttmvgGAAccMus musculusuniversal protein binding microarray (PBM)
PF0069.1SGCGSSAAASGCGsSAAAphylogenetic
MA1159.1SGR5araAwAAGACAAAAwArabidopsis thalianaDAP-seq
MA0630.1SHOXyTAATTrrHomo sapiensPBM
MA0720.1Shox2yyAATTArMus musculusHT-SELEX
PH0160.1Shox2ckmsyTAATTArtyrdsMus musculusuniversal protein binding microarray (PBM)
MA0380.1SIP4yYCCGgrSaccharomyces cerevisiaePBM, CSA and/or DIP-chip
MA1118.1SIX1GwAACCTGAkmHomo sapiensChIP-seq
PH0161.1Six1ratrGGGTATCAykwbtMus musculusuniversal protein binding microarray (PBM)
MA1119.1SIX2wwcTGaAACCTGAtmyHomo sapiensChIP-seq


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