footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

Database 'SMILE-seq 1.0' (Transcription Factors 1-50)

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Accessions	Names	Organisms	Description and notes
ARNTL	ARNTL, B2RCL8_HUMAN	Homo sapiens	TF family: bHLH
Bcd	Bcd, STAU_DROME	Drosophila melanogaster
CEBPB	CEBPB, CEBPB protein, Fragment, Q9BSC0_HUMAN	Homo sapiens	TF family: bZIP
CLOCK	Circadian clock protein PERIOD 1, Circadian pacemaker protein Rigui, CLOCK, PER1_HUMAN, Period circadian protein homolog 1	Homo sapiens	TF family: bHLH
CTCF	11-zinc finger protein, CCCTC-binding factor, CTCF, CTCF_HUMAN, CTCFL paralog, Transcriptional CTCF	Homo sapiens	TF family: znfC2H2
EGR1	Early growth response protein 1, EGR-1, EGR1, EGR1_MOUSE, Nerve growth protein A, NGFI-A, Transcription factor Zif268, Zinc finger protein Krox-24	Mus musculus
EN1	EN1, HME1_HUMAN, Homeobox protein en-1, Homeobox protein engrailed-1, Hu-En-1	Homo sapiens	TF family: homeodomain
FLI1	FLI1, FLI1_HUMAN, Friend leukemia integration 1 transcription factor, Proto-oncogene Fli-1, factor ERGB	Homo sapiens	TF family: ETS
FOS	Cellular oncogene fos, FOS, FOS_HUMAN, G0/G1 switch regulatory protein 7, c-Fos	Homo sapiens	TF family: bZIP
FOSB	FOSB, FOSB_HUMAN, G0/G1 switch regulatory protein 3, Protein fosB	Homo sapiens	TF family: bZIP
FOSL1	B2R9B4_HUMAN, cDNA, FLJ94314, highly similar to Homo sapiens FOS-like antigen FOSL1	Homo sapiens	TF family: bZIP
FOSL2	Alternative protein FOSL2, cDNA: FLJ23306 fis, clone HEP11541, FOS-like antigen isoform CRA_a, FOSL2, Putative uncharacterized protein FLJ23306, Q9H5M2_HUMAN	Homo sapiens	TF family: bZIP
FOXP2	B7ZLK5_HUMAN, FOXP2	Homo sapiens	TF family: Forkhead
GABPA	B2R8X4_HUMAN, cDNA, FLJ94105, highly similar to Homo sapiens GA binding transcription factor, alpha subunit 60kDa, GABPA	Homo sapiens	TF family: ETS
GATA-3	GATA-3, GATA-binding factor 3, GATA3_MOUSE, Trans-acting T-cell-specific transcription factor GATA-3	Mus musculus
GATA3	GATA-binding factor 3, GATA3, GATA3_HUMAN, Trans-acting T-cell-specific transcription factor GATA-3	Homo sapiens	TF family: GATA
GCM1	Chorion-specific transcription factor GCMa, GCM motif protein 1, GCM1, GCM1_HUMAN, cells missing homolog 1, hGCMa	Homo sapiens	TF family: GCM
GR	GCR_MOUSE, Glucocorticoid receptor, GR, Nuclear receptor subfamily 3 group C 1	Mus musculus
Gsc	Gsc, LEM domain-containing protein Otefin, OTE_DROME, Otefin	Drosophila melanogaster
Gt	Gt, UBX_DROME	Drosophila melanogaster
JUN	Activator protein 1, AP1, JUN, JUN_HUMAN, p39, Proto-oncogene c-Jun, Transcription AP-1, V-jun avian sarcoma virus 17 oncogene homolog	Homo sapiens	TF family: bZIP
JUNB	JUNB, JUNB_HUMAN	Homo sapiens	TF family: bZIP
JUND	JUND, JUND_HUMAN	Homo sapiens	TF family: bZIP
LEF1	LEF-1, LEF1, LEF1_HUMAN, Lymphoid enhancer-binding factor 1, T cell-specific transcription 1-alpha, TCF1-alpha	Homo sapiens	TF family: HMG
LHX6	LHX6, LHX6_HUMAN, LIM homeobox protein 6, LIM/homeobox protein Lhx6, LIM/homeobox Lhx6.1	Homo sapiens	TF family: homeobox
MAX	CSAID-binding protein, CSBP, Cytokine suppressive anti-inflammatory drug-binding protein, EC 2.7.11.24, kinase 14, MAP kinase MXI2, MAP kinase p38 alpha, MAPK 14, MAX, MAX-interacting protein 2, Mitogen-activated protein kinase 14, Mitogen-activated protein kinase p38 alpha, MK14_HUMAN, SAPK2a, Stress-activated protein kinase 2a	Homo sapiens	TF family: bHLH
MYF6	bHLHc4, Class C basic helix-loop-helix protein 4, Muscle-specific regulatory factor Myf-6, MYF6, MYF6_HUMAN, Myogenic factor 6	Homo sapiens	TF family: bHLH
NFKB1	E3 SUMO-protein ligase MUL1, E3 ubiquitin-protein ligase MUL1, EC 2.3.2.27, inhibition and death E3 ligase, MAPL, Mitochondrial ubiquitin ligase activator of NFKB 1, Mitochondrial-anchored protein ligase, MUL1_HUMAN, NFKB1, Putative NF-kappa-B-activating protein 266, RING finger protein 218, RING-type E3 ubiquitin transferase NFKB 1	Homo sapiens	TF family: ANK repeats
NR1H4	Fragment, NR1H4, NR1H4 protein, Q6IPQ7_HUMAN	Homo sapiens	TF family: Nuclear Receptor
NR4A2	B7Z5U7_HUMAN, NR4A2	Homo sapiens	TF family: Nuclear Receptor
OCT4	Oct-3, Oct-4, OCT4, Octamer-binding protein 3, Octamer-binding protein 4, Octamer-binding factor 3, OTF-3, PO5F1_HUMAN, POU domain, class 5, transcription factor 1	Homo sapiens	TF family: HMG
Opa	Male-specific opa-containing protein, Opa, OPAP_DROME, Protein dromsopa	Drosophila melanogaster
PAX7	HuP1, Paired box protein Pax-7, PAX7, PAX7_HUMAN	Homo sapiens	TF family: PAX+Homeodomain
PPARA	L8E859_HUMAN, PPARA	Homo sapiens	TF family: Nuclear Receptor
PPARG	Constitutive coactivator of peroxisome proliferator-activated receptor gamma, Constitutive coactivator of Constitutive coactivator of PPARG, F120B_HUMAN, PGCC1, PPARG, PPARG constitutive coactivator 1, Protein FAM120B	Homo sapiens	TF family: Nuclear Receptor
PPARg	Constitutive coactivator of peroxisome proliferator-activated receptor gamma, Constitutive coactivator of Constitutive coactivator of PPARG, F120B_MOUSE, PPARg, Protein FAM120B	Mus musculus
RARA	cDNA, FLJ92939, Homo sapiens retinoic acid receptor, alpha (RARA, Q6I9R7_HUMAN, RARA protein, Retinoic acid nuclear receptor alpha variant 1, Retinoic acid receptor, alpha, isoform CRA_c	Homo sapiens	TF family: Nuclear Receptor
RARg	Nuclear receptor subfamily 1 group B member 3, RAR-gamma, RARg, Retinoic acid receptor gamma	Mus musculus
RFX2	DNA-binding protein RFX2, Regulatory factor X 2, RFX2, RFX2_MOUSE	Mus musculus
RORB	cDNA, FLJ93970, Homo sapiens RAR-related orphan receptor B (RORB, Q58EY0_HUMAN, related orphan receptor B isoform 1, RAR-related orphan receptor B, RAR-related orphan receptor beta, RORB	Homo sapiens	TF family: Nuclear Receptor
RORC	Q6I9R9_HUMAN, RAR-related orphan receptor C, RORC, RORC protein	Homo sapiens	TF family: Nuclear Receptor
RXRA	Fragment, Q6P3U7_HUMAN, RXRA, RXRA protein	Homo sapiens	TF family: Nuclear Receptor
RXRa	Nuclear receptor subfamily 2 group B member 1, Retinoic acid RXR-alpha, Retinoid X receptor alpha, RXRa, RXRA_MOUSE	Mus musculus
RXRG	B2R7C0_HUMAN, cDNA, FLJ93371, highly similar to Homo sapiens retinoid X gamma, RXRG	Homo sapiens	TF family: Nuclear Receptor
Sna	Sna, TOLL_DROME	Drosophila melanogaster
SOX10	SOX10, SOX10_HUMAN	Homo sapiens	TF family: HMG
SOX15	Protein SOX-12, Protein SOX-15, Protein SOX-20, SOX15, SOX15_HUMAN	Homo sapiens	TF family: HMG
SOX17	SOX17, SOX17_HUMAN	Homo sapiens	TF family: HMG
SOX2	SOX2, SOX2_HUMAN	Homo sapiens	TF family: HMG

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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