Database 'HOCOMOCO 10' (DNA Binding Motifs 251-300)
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Pages: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
| Accessions | Names | Consensus | Organisms | Description and notes |
|---|---|---|---|---|
| PO5F1_MOUSE.H10MO.A|M01298 | Pou5f1 | yywTTgwtATGCAaAt | Mus musculus | POU domain factors{3.1.10}; POU5 (Oct-3/4-like factors){3.1.10.5} |
| PPARA_HUMAN.H10MO.C|M01456 PPARA_MOUSE.H10MO.C|M01300 | PPARA | rGGtCArAGGTCA | Homo sapiens Mus musculus | Thyroid hormone receptor-related factors (NR1){2.1.2}; PPAR (NR1C){2.1.2.5} |
| PPARG_HUMAN.H10MO.A|M01459 | PPARG | awstrGGkcAAAGGkcA | Homo sapiens | Thyroid hormone receptor-related factors (NR1){2.1.2}; PPAR (NR1C){2.1.2.5} |
| PPARG_MOUSE.H10MO.A|M01303 | Pparg | awstrGGkcArAGGkcA | Mus musculus | Thyroid hormone receptor-related factors (NR1){2.1.2}; PPAR (NR1C){2.1.2.5} |
| PRDM1_HUMAN.H10MO.C|M01462 | PRDM1 | raAAGtGAAAGTga | Homo sapiens | More than 3 adjacent zinc finger factors{2.3.3}; PRDM1-like factors{2.3.3.12} |
| PRDM1_MOUSE.H10MO.A|M01306 | Prdm1 | rAAAGkGAAAGTrm | Mus musculus | More than 3 adjacent zinc finger factors{2.3.3}; PRDM1-like factors{2.3.3.12} |
| PRD14_HUMAN.H10MO.C|M01461 | PRDM14 | rrGTTAGrGaCCyr | Homo sapiens | More than 3 adjacent zinc finger factors{2.3.3}; unclassified{2.3.3.0} |
| PRRX2_HUMAN.H10MO.C|M01469 PRRX2_MOUSE.H10MO.C|M01311 | PRRX2 | yTAATTr | Homo sapiens Mus musculus | Paired-related HD factors{3.1.3}; PRRX{3.1.3.21} |
| PTF1A_HUMAN.H10MO.C|M01470 PTF1A_MOUSE.H10MO.C|M01312 | PTF1A | crGGrAAmwsmaCAssTGysm | Homo sapiens Mus musculus | Tal-related factors{1.2.3}; Twist-like factors{1.2.3.2} |
| RARA_HUMAN.H10MO.C|M01472 RARA_MOUSE.H10MO.C|M01314 | RARA | rGkTCAysrrgaGgtCA | Homo sapiens Mus musculus | Thyroid hormone receptor-related factors (NR1){2.1.2}; Retinoic acid receptors (NR1B){2.1.2.1} |
| RARG_HUMAN.H10MO.C|M01475 RARG_MOUSE.H10MO.C|M01317 | RARG | ggrGktcrscvrvAGKTCAv | Homo sapiens Mus musculus | Thyroid hormone receptor-related factors (NR1){2.1.2}; Retinoic acid receptors (NR1B){2.1.2.1} |
| SUH_HUMAN.H10MO.C|M01546 | RBPJ | sygTGrGAAma | Homo sapiens | CSL-related factors{6.1.4}; M{6.1.4.1} |
| SUH_MOUSE.H10MO.C|M01371 | Rbpj | cgTGGGAAm | Mus musculus | CSL-related factors{6.1.4}; M{6.1.4.1} |
| REL_HUMAN.H10MO.C|M01479 REL_MOUSE.H10MO.C|M01320 | REL | dkGGrmwTTCCm | Homo sapiens Mus musculus | NF-kappaB-related factors{6.1.1}; NF-kappaB p65 subunit-like factors{6.1.1.2} |
| TF65_HUMAN.H10MO.A|M01566 | RELA | GGGrmTTyCCm | Homo sapiens | NF-kappaB-related factors{6.1.1}; NF-kappaB p65 subunit-like factors{6.1.1.2} |
| TF65_MOUSE.H10MO.C|M01385 | Rela | GGrawttCCmwdmTtkckhmay | Mus musculus | NF-kappaB-related factors{6.1.1}; NF-kappaB p65 subunit-like factors{6.1.1.2} |
| RELB_HUMAN.H10MO.C|M01478 RELB_MOUSE.H10MO.C|M01319 | RELB | rGGGrmTTTcCm | Homo sapiens Mus musculus | NF-kappaB-related factors{6.1.1}; NF-kappaB p65 subunit-like factors{6.1.1.2} |
| REST_HUMAN.H10MO.A|M01480 | REST | tTCAGcACCayGGACAGCkcCm | Homo sapiens | Factors with multiple dispersed zinc fingers{2.3.4}; unclassified{2.3.4.0} |
| REST_MOUSE.H10MO.A|M01321 | Rest | yCaGsACCayGGACAGcdcCc | Mus musculus | Factors with multiple dispersed zinc fingers{2.3.4}; unclassified{2.3.4.0} |
| RFX1_HUMAN.H10MO.C|M01481 | RFX1 | GTTGCyagGsra | Homo sapiens | RFX-related factors{3.3.3}; RFX1 (EF-C){3.3.3.0.1} |
| RFX1_MOUSE.H10MO.C|M01322 | Rfx1 | sssscsGTTGCCAkGGcraCss | Mus musculus | RFX-related factors{3.3.3}; RFX1 (EF-C){3.3.3.0.1} |
| RFX2_HUMAN.H10MO.C|M01482 | RFX2 | sssscsGTTGCCAkGGmrACsg | Homo sapiens | RFX-related factors{3.3.3}; RFX2{3.3.3.0.2} |
| RFX2_MOUSE.H10MO.C|M01323 | Rfx2 | kGTTGCymGGsRa | Mus musculus | RFX-related factors{3.3.3}; RFX2{3.3.3.0.2} |
| RFX3_HUMAN.H10MO.B|M01483 RFX3_MOUSE.H10MO.B|M01324 | RFX3 | sGTTrCCATGGyra | Homo sapiens Mus musculus | RFX-related factors{3.3.3}; RFX3{3.3.3.0.3} |
| RFX5_HUMAN.H10MO.A|M01485 | RFX5 | stcmbcwGTtgCyrgGsara | Homo sapiens | RFX-related factors{3.3.3}; RFX5{3.3.3.0.5} |
| RORA_HUMAN.H10MO.B|M01487 RORA_MOUSE.H10MO.B|M01325 | RORA | wwAwsTAGGTCA | Homo sapiens Mus musculus | Thyroid hormone receptor-related factors (NR1){2.1.2}; ROR (NR1F){2.1.2.6} |
| RORG_HUMAN.H10MO.C|M01488 RORG_MOUSE.H10MO.C|M01326 | RORC | dwAwGTrGGTCAG | Homo sapiens Mus musculus | Thyroid hormone receptor-related factors (NR1){2.1.2}; ROR (NR1F){2.1.2.6} |
| RUNX1_HUMAN.H10MO.A|M01490 | RUNX1 | byTGTGGTTwk | Homo sapiens | Runt-related factors{6.4.1}; Runx1 (PEBP2alphaB, CBF-alpha2, AML-1){6.4.1.0.2} |
| RUNX1_MOUSE.H10MO.B|M01328 | Runx1 | wyTGTGGTtw | Mus musculus | Runt-related factors{6.4.1}; Runx1 (PEBP2alphaB, CBF-alpha2, AML-1){6.4.1.0.2} |
| RUNX2_HUMAN.H10MO.B|M01491 RUNX2_MOUSE.H10MO.B|M01329 | RUNX2 | yTGTGGTtdgk | Homo sapiens Mus musculus | Runt-related factors{6.4.1}; Runx2 (PEBP2alphaA, CBF-alpha1){6.4.1.0.1} |
| RUNX3_HUMAN.H10MO.C|M01492 | RUNX3 | ktyTGTGGTTw | Homo sapiens | Runt-related factors{6.4.1}; Runx3 (PEBP2alphaC, CBF-alpha3, AML-2){6.4.1.0.3} |
| RUNX3_MOUSE.H10MO.B|M01330 | Runx3 | kGkkkTTTGyGGTt | Mus musculus | Runt-related factors{6.4.1}; Runx3 (PEBP2alphaC, CBF-alpha3, AML-2){6.4.1.0.3} |
| RXRA_HUMAN.H10MO.C|M01493 | RXRA | mwstrGgksAAAGGtcA | Homo sapiens | RXR-related receptors (NR2){2.1.3}; Retinoid X receptors (NR2B){2.1.3.1} |
| RXRA_MOUSE.H10MO.C|M01331 | Rxra | rrgrtcarrAGkTCAAGGtCAk | Mus musculus | RXR-related receptors (NR2){2.1.3}; Retinoid X receptors (NR2B){2.1.3.1} |
| RXRB_HUMAN.H10MO.C|M01494 RXRB_MOUSE.H10MO.C|M01332 | RXRB | tsAGGTCAsr | Homo sapiens Mus musculus | RXR-related receptors (NR2){2.1.3}; Retinoid X receptors (NR2B){2.1.3.1} |
| RXRG_HUMAN.H10MO.B|M01495 | RXRG | gGTCAAAGGTCAh | Homo sapiens | RXR-related receptors (NR2){2.1.3}; Retinoid X receptors (NR2B){2.1.3.1} |
| RXRG_MOUSE.H10MO.C|M01333 | Rxrg | rAGkTCAAGGtCAgsct | Mus musculus | RXR-related receptors (NR2){2.1.3}; Retinoid X receptors (NR2B){2.1.3.1} |
| SMAD2_HUMAN.H10MO.C|M01502 | SMAD2 | wGTCTgkCACyt | Homo sapiens | SMAD factors{7.1.1}; Regulatory Smads (R-Smad){7.1.1.1} |
| SMAD3_HUMAN.H10MO.C|M01503 SMAD3_MOUSE.H10MO.C|M01336 | SMAD3 | gtGTCTGgcy | Homo sapiens Mus musculus | SMAD factors{7.1.1}; Regulatory Smads (R-Smad){7.1.1.1} |
| SMAD4_HUMAN.H10MO.C|M01504 | SMAD4 | swGTCTgkCACct | Homo sapiens | SMAD factors{7.1.1}; Co-activating Smads (Co-Smad){7.1.1.2} |
| SMAD4_MOUSE.H10MO.C|M01337 | Smad4 | tGTCTGkmy | Mus musculus | SMAD factors{7.1.1}; Co-activating Smads (Co-Smad){7.1.1.2} |
| SMRC1_MOUSE.H10MO.B|M01338 | Smarcc1 | vTGAGTCAy | Mus musculus | Myb/SANT domain factors{3.5.1}; TADA2-like factors{3.5.1.6} |
| SNAI1_HUMAN.H10MO.C|M01506 SNAI1_MOUSE.H10MO.C|M01339 | SNAI1 | cCAGGTGg | Homo sapiens Mus musculus | More than 3 adjacent zinc finger factors{2.3.3}; Snail-like factors{2.3.3.2} |
| SNAI2_HUMAN.H10MO.C|M01507 SNAI2_MOUSE.H10MO.C|M01340 | SNAI2 | yCAGGTG | Homo sapiens Mus musculus | More than 3 adjacent zinc finger factors{2.3.3}; Snail-like factors{2.3.3.2} |
| SOX2_HUMAN.H10MO.B|M01516 SOX2_MOUSE.H10MO.A|M01346 | SOX2 | cYwTTGTyaTgcaaAt | Homo sapiens Mus musculus | SOX-related factors{4.1.1}; Group B{4.1.1.2} |
| SOX3_MOUSE.H10MO.C|M01347 | Sox3 | kCCWTTGTbyy | Mus musculus | SOX-related factors{4.1.1}; Group B{4.1.1.2} |
| SOX4_HUMAN.H10MO.C|M01518 SOX4_MOUSE.H10MO.C|M01348 | SOX4 | CsCTTTGTTyKm | Homo sapiens Mus musculus | SOX-related factors{4.1.1}; Group C{4.1.1.3} |
| SOX5_HUMAN.H10MO.C|M01519 SOX5_MOUSE.H10MO.C|M01349 | SOX5 | yATTGTTw | Homo sapiens Mus musculus | SOX-related factors{4.1.1}; Group D{4.1.1.4} |
| SOX9_HUMAN.H10MO.B|M01522 SOX9_MOUSE.H10MO.B|M01350 | SOX9 | yCyATTGTTyt | Homo sapiens Mus musculus | SOX-related factors{4.1.1}; Group E{4.1.1.5} |
| SP1_HUMAN.H10MO.C|M01523 SP1_MOUSE.H10MO.A|M01351 | SP1 | gggrrgGGGGcGGGGcsrg | Homo sapiens Mus musculus | Three-zinc finger Krüppel-related factors{2.3.1}; Sp1-like factors{2.3.1.1} |
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