footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

Database 'HumanTF 1.0' (Transcription Factors 401-450)

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If you want to search for a protein sequence or a DNA motif use the Sequence Search Form.

Pages: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11

Accessions	Names	Organisms	Description and notes
RUNX3_full	Acute myeloid leukemia 2 protein, CBF-alpha-3, Core-binding factor subunit alpha-3, AML-2, PEA2-alpha C, PEBP2-alpha C, Polyomavirus enhancer-binding protein 2 alpha C subunit, Runt-related transcription factor 3, RUNX3, RUNX3_HUMAN, SL3-3 enhancer factor 1 alpha C subunit, SL3/AKV core-binding factor alpha C subunit	Homo sapiens	Ensembl ID: ENSG00000020633; Full protein sequence; TF family: RUNT; Clone hORFeome
RXRA_DBD	Fragment, Q6P3U7_HUMAN, RXRA, RXRA protein	Homo sapiens	Ensembl ID: ENSG00000186350; DNA-binding domain sequence; TF family: Nuclear_Receptor; Clone Gene synthesis
RXRA_full	Fragment, Q6P3U7_HUMAN, RXRA, RXRA protein	Homo sapiens	Ensembl ID: ENSG00000186350; Full protein sequence; TF family: Nuclear_Receptor; Clone hORFeome
Rxra_DBD	Nuclear receptor subfamily 2 group B member 1, Retinoic acid RXR-alpha, Retinoid X receptor alpha, Rxra, RXRA_MOUSE	Mus musculus	Ensembl ID: ENSMUSG00000015846; DNA-binding domain sequence; TF family: Nuclear_Receptor; Clone Hughes lab.
RXRB_DBD	Nuclear receptor subfamily 2 group B member 2, Retinoic acid RXR-beta, Retinoid X receptor beta, RXRB, RXRB_HUMAN	Homo sapiens	Ensembl ID: ENSG00000206289; DNA-binding domain sequence; TF family: Nuclear_Receptor; Clone Megaman
Rxrb_DBD	Q8VCR0_MOUSE, Retinoic acid receptor RXR-beta, Rxrb, Rxrb protein	Mus musculus	Ensembl ID: ENSMUSG00000039656; DNA-binding domain sequence; TF family: Nuclear_Receptor; Clone Hughes lab.
RXRG_DBD	B2R7C0_HUMAN, cDNA, FLJ93371, highly similar to Homo sapiens retinoid X gamma, RXRG	Homo sapiens	Ensembl ID: ENSG00000143171; DNA-binding domain sequence; TF family: Nuclear_Receptor; Clone MGC
RXRG_full	B2R7C0_HUMAN, cDNA, FLJ93371, highly similar to Homo sapiens retinoid X gamma, RXRG	Homo sapiens	Ensembl ID: ENSG00000143171; Full protein sequence; TF family: Nuclear_Receptor; Clone hORFeome
SCRT1_DBD	hScrt, Scratch homolog 1 zinc finger protein, SCRT1, SCRT1_HUMAN, Transcriptional scratch 1	Homo sapiens	Ensembl ID: ENSG00000170616; DNA-binding domain sequence; TF family: znfC2H2; Clone Gene synthesis
SCRT2_DBD	Scratch homolog 2 zinc finger protein, SCRT2, SCRT2_HUMAN, Transcriptional repressor 2	Homo sapiens	Ensembl ID: ENSG00000215397; DNA-binding domain sequence; TF family: znfC2H2; Clone Gene synthesis
SHOX_DBD	Pseudoautosomal homeobox-containing osteogenic protein, Short stature homeobox protein, Short stature protein, SHOX, SHOX_HUMAN	Homo sapiens	Ensembl ID: ENSG00000185960; DNA-binding domain sequence; TF family: homeodomain; Clone Megaman
SHOX2_DBD	Homeobox protein Og12X, Paired-related homeobox protein SHOT, Short stature homeobox 2, SHOX2, SHOX2_HUMAN	Homo sapiens	Ensembl ID: ENSG00000168779; DNA-binding domain sequence; TF family: homeodomain; Clone Gene synthesis
Shox2_DBD	Homeobox protein Og12X, OG-12, Paired family homeodomain protein Prx3, Short homeobox protein 2, Shox2, SHOX2_MOUSE	Mus musculus	Ensembl ID: ENSMUSG00000027833; DNA-binding domain sequence; TF family: homeodomain; Clone Hughes lab.
SMAD3_DBD	hMAD-3, hSMAD3, JV15-2, MAD homolog 3, Mothers against decapentaplegic homolog Mothers against DPP homolog 3, SMAD 3, SMAD family member 3, SMAD3, SMAD3_HUMAN	Homo sapiens	Ensembl ID: ENSG00000166949; DNA-binding domain sequence; TF family: MAD; Clone MGC
SNAI2_DBD	Neural crest transcription factor Slug, Protein snail homolog 2, SNAI2, Zinc finger protein SNAI2	Homo sapiens	Ensembl ID: ENSG00000019549; DNA-binding domain sequence; TF family: znfC2H2; Clone MGC
Sox1_DBD	Sox1, SOX1_MOUSE	Mus musculus	Ensembl ID: ENSMUSG00000079994; DNA-binding domain sequence; TF family: HMG; Clone Hughes lab.
SOX10_full	SOX10, SOX10_HUMAN	Homo sapiens	Ensembl ID: ENSG00000100146; Full protein sequence; TF family: HMG; Clone hORFeome
Sox10_DBD	Protein SOX-21, Sox10, SOX10_MOUSE, Transcription factor SOX-10, Transcription factor SOX-M	Mus musculus	Ensembl ID: ENSMUSG00000033006; DNA-binding domain sequence; TF family: HMG; Clone Hughes lab.
Sox11_DBD	Sox11, SOX11_MOUSE	Mus musculus	Ensembl ID: ENSMUSG00000063632; DNA-binding domain sequence; TF family: HMG; Clone Hughes lab.
SOX14_DBD	Protein SOX-28, SOX14, SOX14_HUMAN, Transcription factor SOX-14	Homo sapiens	Ensembl ID: ENSG00000168875; DNA-binding domain sequence; TF family: HMG; Clone Gene synthesis
SOX15_full	Protein SOX-12, Protein SOX-15, Protein SOX-20, SOX15, SOX15_HUMAN	Homo sapiens	Ensembl ID: ENSG00000129194; Full protein sequence; TF family: HMG; Clone hORFeome
Sox17_DBD	Sox17, SOX17_MOUSE	Mus musculus	Ensembl ID: ENSMUSG00000025902; DNA-binding domain sequence; TF family: HMG; Clone Hughes lab.
SOX18_full	SOX18, SOX18_HUMAN	Homo sapiens	Ensembl ID: ENSG00000203883; Full protein sequence; TF family: HMG; Clone hORFeome
SOX2_DBD SOX9_DBD	SOX2, SOX2_HUMAN, SOX9, SOX9_HUMAN	Homo sapiens	Ensembl ID: ENSG00000181449; DNA-binding domain sequence; TF family: HMG; Clone MGC, Ensembl ID: ENSG00000125398; DNA-binding domain sequence; TF family: HMG; Clone source: MGC
SOX2_full	SOX2, SOX2_HUMAN	Homo sapiens	Ensembl ID: ENSG00000181449; Full protein sequence; TF family: HMG; Clone hORFeome
SOX21_DBD	SOX-A, SOX21, SOX21_HUMAN, Transcription factor SOX-21	Homo sapiens	Ensembl ID: ENSG00000125285; DNA-binding domain sequence; TF family: HMG; Clone MGC
Sox3_DBD	Sox3, SOX3_MOUSE	Mus musculus	Ensembl ID: ENSMUSG00000045179; DNA-binding domain sequence; TF family: HMG; Clone Hughes lab.
SOX4_DBD	SOX4, SOX4_HUMAN	Homo sapiens	Ensembl ID: ENSG00000124766; DNA-binding domain sequence; TF family: HMG; Clone Gene synthesis
SOX7_full	SOX7, SOX7_HUMAN	Homo sapiens	Ensembl ID: ENSG00000171056; Full protein sequence; TF family: HMG; Clone hORFeome
SOX8_DBD	SOX8, SOX8_HUMAN	Homo sapiens	Ensembl ID: ENSG00000005513; DNA-binding domain sequence; TF family: HMG; Clone Gene synthesis
SOX8_full	SOX8, SOX8_HUMAN	Homo sapiens	Ensembl ID: ENSG00000005513; Full protein sequence; TF family: HMG; Clone hORFeome
SOX9_full	SOX9, SOX9_HUMAN	Homo sapiens	Ensembl ID: ENSG00000125398; Full protein sequence; TF family: HMG; Clone Megaman
SP1_DBD	SP1, SP1_HUMAN	Homo sapiens	Ensembl ID: ENSG00000185591; DNA-binding domain sequence; TF family: znfC2H2; Clone Megaman
SP3_DBD	SP3, SP3_HUMAN, SPR-2, Transcription factor Sp3	Homo sapiens	Ensembl ID: ENSG00000172845; DNA-binding domain sequence; TF family: znfC2H2; Clone Megaman
SP4_full	SP4, SP4_HUMAN, SPR-1, Transcription factor Sp4	Homo sapiens	Ensembl ID: ENSG00000105866; Full protein sequence; TF family: znfC2H2; Clone hORFeome
SP8_DBD	SP8, SP8_HUMAN, Specificity protein 8, Transcription factor Sp8	Homo sapiens	Ensembl ID: ENSG00000164651; DNA-binding domain sequence; TF family: znfC2H2; Clone Gene synthesis
SPDEF_DBD	Prostate epithelium-specific Ets transcription factor, Prostate-derived Ets factor, Prostate-specific Ets, pointed domain-containing Ets transcription factor, SPDEF, SPDEF_HUMAN	Homo sapiens	Ensembl ID: ENSG00000124664; DNA-binding domain sequence; TF family: ETS; Clone Megaman
SPDEF_full	Prostate epithelium-specific Ets transcription factor, Prostate-derived Ets factor, Prostate-specific Ets, pointed domain-containing Ets transcription factor, SPDEF, SPDEF_HUMAN	Homo sapiens	Ensembl ID: ENSG00000124664; Full protein sequence; TF family: ETS; Clone hORFeome
SPI1_full	B4DUG6_HUMAN, cDNA FLJ57438, highly similar to Transcription factor Spi-B, Spi-1/PU.1 Spi-B transcription factor, SPI1, Transcription factor Spi-B	Homo sapiens	Ensembl ID: ENSG00000066336; Full protein sequence; TF family: ETS; Clone Megaman
SPIB_DBD	SPIB, SPIB_HUMAN	Homo sapiens	Ensembl ID: ENSG00000142539; DNA-binding domain sequence; TF family: ETS; Clone hORFeome
SPIC_full	SPIC, SPIC_HUMAN	Homo sapiens	Ensembl ID: ENSG00000166211; Full protein sequence; TF family: ETS; Clone hORFeome
Spic_DBD	Prf, Pu.1-related factor, Spic, SPIC_MOUSE, Transcription factor Spi-C	Mus musculus	Ensembl ID: ENSMUSG00000004359; DNA-binding domain sequence; TF family: ETS; Clone Hughes lab.
Srebf1_DBD	SRBP1_MOUSE, Srebf1, SREBP-1, Sterol regulatory element-binding protein 1, Sterol regulatory transcription factor 1	Mus musculus	Ensembl ID: ENSMUSG00000020538; DNA-binding domain sequence; TF family: bHLH; Clone Hughes lab.
SREBF2_DBD	Q05BD5_HUMAN, SREBF2	Homo sapiens	Ensembl ID: ENSG00000198911; DNA-binding domain sequence; TF family: bHLH; Clone MGC
SRF_DBD	Serum response factor, SRF, SRF_HUMAN	Homo sapiens	Ensembl ID: ENSG00000112658; DNA-binding domain sequence; TF family: MADS; Clone MGC
SRF_full	Serum response factor, SRF, SRF_HUMAN	Homo sapiens	Ensembl ID: ENSG00000112658; Full protein sequence; TF family: MADS; Clone Megaman
SRY_DBD	Na(+)/H(+) exchange regulatory cofactor NHE-RF2, NHE3 kinase A regulatory protein NHERF-2, NHRF2_HUMAN, SIP-1, Sodium-hydrogen exchanger regulatory factor 2, Solute carrier family 9 isoform A3 regulatory factor 2, SRY, SRY-interacting protein 1, TKA-1, Tyrosine kinase activator protein 1	Homo sapiens	Ensembl ID: ENSG00000184895; DNA-binding domain sequence; TF family: HMG; Clone Gene synthesis
T_full	CD antigen CD4, CD4_HUMAN, T, T-cell surface antigen T4/Leu-3, T-cell glycoprotein CD4	Homo sapiens	Ensembl ID: ENSG00000164458; Full protein sequence; TF family: T-box; Clone Megaman
TBR1_DBD	T-box brain protein 1, T-brain-1, TBR-1, TBR1, TBR1_MOUSE, TES-56	Mus musculus	Ensembl ID: ENSMUSG00000035033; DNA-binding domain sequence; TF family: T-box; Clone Hughes lab.
TBR1_full	T-box brain protein 1, T-brain-1, TBR-1, TBR1, TBR1_HUMAN, TES-56	Homo sapiens	Ensembl ID: ENSG00000136535; Full protein sequence; TF family: T-box; Clone hORFeome

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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