footprintDB - a database of transcription factors with annotated cis elements (DNA motifs and sites) and binding interfaces

Database 'HumanTF 1.0' (Transcription Factors 1-50)

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Pages: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11

Accessions	Names	Organisms	Description and notes
Alx1_DBD	ALX homeobox protein 1, Alx1, ALX1_MOUSE, CART-1, Cartilage homeoprotein 1	Mus musculus	Ensembl ID: ENSMUSG00000036602; DNA-binding domain sequence; TF family: homeodomain; Clone Hughes lab.
ALX3_DBD	ALX3, ALX3_HUMAN, Homeobox protein aristaless-like 3, Proline-rich transcription factor ALX3	Homo sapiens	Ensembl ID: ENSG00000156150; DNA-binding domain sequence; TF family: homeodomain; Clone Gene synthesis
ALX3_full	ALX3, ALX3_HUMAN, Homeobox protein aristaless-like 3, Proline-rich transcription factor ALX3	Homo sapiens	Ensembl ID: ENSG00000156150; Full protein sequence; TF family: homeodomain; Clone hORFeome
ALX4_DBD	ALX4, ALX4_HUMAN	Homo sapiens	Ensembl ID: ENSG00000052850; DNA-binding domain sequence; TF family: homeodomain; Clone Megaman
Alx4_DBD	ALX-4, Alx4, ALX4_MOUSE, Homeobox protein aristaless-like 4	Mus musculus	Ensembl ID: ENSMUSG00000040310; DNA-binding domain sequence; TF family: homeodomain; Clone Hughes lab.
AR_DBD	AR, EDNRA_HUMAN, Endothelin A receptor, Endothelin-1 receptor, ET-A, ETA-R, hET-AR	Homo sapiens	Ensembl ID: ENSG00000169083; DNA-binding domain sequence; TF family: Nuclear_Receptor; Clone Gene synthesis
AR_full	AR, EDNRA_HUMAN, Endothelin A receptor, Endothelin-1 receptor, ET-A, ETA-R, hET-AR	Homo sapiens	Ensembl ID: ENSG00000169083; Full protein sequence; TF family: Nuclear_Receptor; Clone hORFeome
Ar_DBD	Aldehyde reductase, Aldose reductase, ALDR_MOUSE, Ar, EC 1.1.1.21	Mus musculus	Ensembl ID: ENSMUSG00000046532; DNA-binding domain sequence; TF family: Nuclear_Receptor; Clone Hughes lab.
ARNTL_DBD	ARNTL, B2RCL8_HUMAN	Homo sapiens	Ensembl ID: ENSG00000133794; DNA-binding domain sequence; TF family: bHLH; Clone Megaman
ARX_DBD	Aristaless-related homeobox, ARX, ARX_HUMAN, Homeobox protein ARX	Homo sapiens	Ensembl ID: ENSG00000004848; DNA-binding domain sequence; TF family: homeodomain; Clone Gene synthesis
Arx_DBD	Aristaless-related homeobox, Arx, ARX_MOUSE, Homeobox protein ARX	Mus musculus	Ensembl ID: ENSMUSG00000035277; DNA-binding domain sequence; TF family: homeodomain; Clone Hughes lab.
Ascl2_DBD	Achaete-scute homolog 2, Ascl2, ASCL2_MOUSE, ASH-2, mASH-2, mASH2	Mus musculus	Ensembl ID: ENSMUSG00000009248; DNA-binding domain sequence; TF family: bHLH; Clone Hughes lab.
ATF4_DBD	Activating transcription factor 4, ATF4, ATF4_HUMAN, cAMP-dependent transcription factor ATF-4, element-binding protein 2, CREB-2, Cyclic AMP-dependent transcription factor ATF-4, Cyclic AMP-responsive element-binding protein 2, DNA-binding protein TAXREB67, Tax-responsive enhancer element-binding protein 67	Homo sapiens	Ensembl ID: ENSG00000128272; DNA-binding domain sequence; TF family: bZIP; Clone MGC
Atf4_DBD	Activating transcription factor 4, Atf4, ATF4_MOUSE, C/ATF, C/EBP-related ATF, cAMP-dependent factor ATF-4, Cyclic AMP-dependent transcription factor ATF-4, Tax-responsive enhancer element-binding protein 67 homolog, TaxREB67 homolog	Mus musculus	Ensembl ID: ENSMUSG00000042406; DNA-binding domain sequence; TF family: bZIP; Clone Hughes lab.
ATF7_DBD	Activating transcription factor 7, ATF7, ATF7_HUMAN, cAMP-dependent transcription factor ATF-7, AMP-dependent transcription factor ATF-7, Transcription factor ATF-A	Homo sapiens	Ensembl ID: ENSG00000170653; DNA-binding domain sequence; TF family: bZIP; Clone Gene synthesis
Atoh1_DBD	Atoh1, ATOH1_MOUSE, Helix-loop-helix protein mATH-1, mATH1, Protein atonal homolog 1	Mus musculus	Ensembl ID: ENSMUSG00000073043; DNA-binding domain sequence; TF family: bHLH; Clone Hughes lab.
Barhl1_DBD	Bar-class homeodomain protein MBH2, BarH-like 1 homeobox protein, BarH-related homeobox 1, BARH1_MOUSE, Barhl1	Mus musculus	Ensembl ID: ENSMUSG00000026805; DNA-binding domain sequence; TF family: homeodomain; Clone Hughes lab.
BARHL2_DBD	BARH2_HUMAN, BARHL2	Homo sapiens	Ensembl ID: ENSG00000143032; DNA-binding domain sequence; TF family: homeodomain; Clone Megaman
BARHL2_full	BARH2_HUMAN, BARHL2	Homo sapiens	Ensembl ID: ENSG00000143032; Full protein sequence; TF family: homeodomain; Clone Megaman
BARX1_DBD	BARX1, BARX1_HUMAN	Homo sapiens	Ensembl ID: ENSG00000131668; DNA-binding domain sequence; TF family: homeodomain; Clone hDBD_G
BATF3_DBD	21 kDa small nuclear factor isolated from T-cells, B-ATF-3, Basic zipper transcriptional factor ATF-like 3, BATF3, BATF3_HUMAN, Jun dimerization protein p21SNFT	Homo sapiens	Ensembl ID: ENSG00000123685; DNA-binding domain sequence; TF family: bZIP; Clone Megaman
BCL6B_DBD	A8KA13_HUMAN, B-cell CLL/lymphoma 6, member B, BCL6B, cDNA FLJ16548 fis, PLACE7000410, highly similar to B-cell CLL/lymphoma 6 member B protein, cDNA FLJ77637, cDNA FLJ77701, highly similar to Homo sapiens B-cell CLL/lymphoma 6, member B (zinc finger protein, Zinc finger protein	Homo sapiens	Ensembl ID: ENSG00000161940; DNA-binding domain sequence; TF family: znfC2H2; Clone MGC
BHLHA15_DBD	BHA15_HUMAN, BHLHA15, bHLHb8, Class A basic helix-loop-helix protein 15, Class basic helix-loop-helix protein 8, MIST-1, Muscle, intestine and stomach expression 1	Homo sapiens	Ensembl ID: ENSG00000180535; DNA-binding domain sequence; TF family: bHLH; Clone Gene synthesis
BHLHB2_DBD	BHE40_HUMAN, BHLHB2, bHLHe40, Class B basic helix-loop-helix protein 2, Class basic helix-loop-helix protein 40, DEC1, Differentially expressed in chondrocytes protein 1, Enhancer-of-split and hairy-related protein 2, SHARP-2, Stimulated by retinoic acid gene 13 protein	Homo sapiens	Ensembl ID: ENSG00000134107; DNA-binding domain sequence; TF family: bHLH; Clone Megaman
Bhlhb2_DBD	BHE40_MOUSE, Bhlhb2, bHLHe40, Class B basic helix-loop-helix protein 2, Class basic helix-loop-helix protein 40, E47 interaction protein 1, EIP1, Stimulated by retinoic acid gene 13 protein	Mus musculus	Ensembl ID: ENSMUSG00000030103; DNA-binding domain sequence; TF family: bHLH; Clone Hughes lab.
BHLHB3_full	BHE41_HUMAN, BHLHB3, bHLHe41, Class B basic helix-loop-helix protein 3, Class basic helix-loop-helix protein 41, Differentially expressed in chondrocytes protein 2, Enhancer-of-split and hairy-related protein 1, hDEC2, SHARP-1	Homo sapiens	Ensembl ID: ENSG00000123095; Full protein sequence; TF family: bHLH; Clone Megaman
BHLHE22_DBD	BHE22_HUMAN, bHLHb5, BHLHE22, Class B basic helix-loop-helix protein 5, Class basic helix-loop-helix protein 22, Trinucleotide repeat-containing gene 20 protein	Homo sapiens	Ensembl ID: ENSG00000180828; DNA-binding domain sequence; TF family: bHLH; Clone Megaman
BHLHE23_DBD	BHE23_HUMAN, bHLHb4, BHLHE23, Class B basic helix-loop-helix protein 4, Class basic helix-loop-helix protein 23	Homo sapiens	Ensembl ID: ENSG00000125533; DNA-binding domain sequence; TF family: bHLH; Clone Gene synthesis
BHLHE41_full	BHE41_HUMAN, bHLHb3, BHLHE41, Class B basic helix-loop-helix protein 3, Class basic helix-loop-helix protein 41, Differentially expressed in chondrocytes protein 2, Enhancer-of-split and hairy-related protein 1, hDEC2, SHARP-1	Homo sapiens	Ensembl ID: ENSG00000123095; Full protein sequence; TF family: bHLH; source: hORFeome
BSX_DBD	BSH_HUMAN, BSX	Homo sapiens	Ensembl ID: ENSG00000188909; DNA-binding domain sequence; TF family: homeodomain; Clone Gene synthesis
CART1_DBD	ALX homeobox protein 1, ALX1_HUMAN, CART-1, CART1, Cartilage homeoprotein 1	Homo sapiens	Ensembl ID: ENSG00000180318; DNA-binding domain sequence; TF family: homeodomain; Clone MGC
CDX1_DBD	Caudal-type homeobox protein 1, CDX1, CDX1_HUMAN, Homeobox protein CDX-1	Homo sapiens	Ensembl ID: ENSG00000113722; DNA-binding domain sequence; TF family: homeodomain; Clone Gene synthesis
CDX2_DBD	Caudal-type homeobox protein 2, CDX-3, CDX2, CDX2_HUMAN, Homeobox protein CDX-2	Homo sapiens	Ensembl ID: ENSG00000165556; DNA-binding domain sequence; TF family: homeodomain; Clone Gene synthesis
CEBPB_DBD	CEBPB, CEBPB protein, Fragment, Q9BSC0_HUMAN	Homo sapiens	Ensembl ID: ENSG00000172216; DNA-binding domain sequence; TF family: bZIP; Clone MGC
CEBPB_full	CEBPB, CEBPB protein, Fragment, Q9BSC0_HUMAN	Homo sapiens	Ensembl ID: ENSG00000172216; Full protein sequence; TF family: bZIP; Clone hORFeome
Cebpb_DBD	AGP/EBP, C/EBP beta, CCAAT/enhancer-binding protein beta, Cebpb, CEBPB_MOUSE, IL-6DBP, Interleukin-6-dependent-binding LAP, Liver-enriched transcriptional activator	Mus musculus	Ensembl ID: ENSMUSG00000056501; DNA-binding domain sequence; TF family: bZIP; Clone Hughes lab.
CEBPD_DBD	CEBPD, Q504X4_HUMAN	Homo sapiens	Ensembl ID: ENSG00000221869; DNA-binding domain sequence; TF family: bZIP; Clone Gene synthesis
CEBPE_DBD	C/EBP epsilon, CCAAT/enhancer-binding protein epsilon, CEBPE, CEBPE_HUMAN	Homo sapiens	Ensembl ID: ENSG00000092067; DNA-binding domain sequence; TF family: bZIP; Clone MGC
CEBPG_DBD	C/EBP gamma, CCAAT/enhancer-binding protein gamma, CEBPG, CEBPG_HUMAN	Homo sapiens	Ensembl ID: ENSG00000153879; DNA-binding domain sequence; TF family: bZIP; Clone MGC
CEBPG_full	C/EBP gamma, CCAAT/enhancer-binding protein gamma, CEBPG, CEBPG_HUMAN	Homo sapiens	Ensembl ID: ENSG00000153879; Full protein sequence; TF family: bZIP; Clone hORFeome
CENPB_full	CENP-B, CENPB, CENPB_HUMAN, Centromere protein B, Major centromere autoantigen B	Homo sapiens	Ensembl ID: ENSG00000125817; Full protein sequence; TF family: CENPB; Clone hORFeome
CLOCK_DBD	Circadian clock protein PERIOD 1, Circadian pacemaker protein Rigui, CLOCK, PER1_HUMAN, Period circadian protein homolog 1	Homo sapiens	Ensembl ID: ENSG00000134852; DNA-binding domain sequence; TF family: bHLH; Clone Gene synthesis
CPEB1_full	B7Z237_HUMAN, cDNA FLJ56063, highly similar to Homo sapiens cytoplasmic polyadenylation binding protein 1, CPEB1	Homo sapiens	Ensembl ID: ENSG00000214575; Full protein sequence; TF family: CPEB; Clone Megaman
CREB3_full	CREB3, CREB3 regulatory factor, CRERF_HUMAN, LRF, Luman recruitment factor	Homo sapiens	Ensembl ID: ENSG00000107175; Full protein sequence; TF family: bZIP; Clone hORFeome
CREB3L1_DBD	B2RA75_HUMAN, cDNA, FLJ94739, highly similar to Homo sapiens cAMP responsive binding protein 3-like 1, CREB3L1	Homo sapiens	Ensembl ID: ENSG00000157613; DNA-binding domain sequence; TF family: bZIP; Clone Gene synthesis
CREB3L1_full	B2RA75_HUMAN, cDNA, FLJ94739, highly similar to Homo sapiens cAMP responsive binding protein 3-like 1, CREB3L1	Homo sapiens	Ensembl ID: ENSG00000157613; Full protein sequence; TF family: bZIP; Clone hORFeome
Creb3l2_DBD	Creb3l2, Creb3l2 protein, Fragment, Q922T5_MOUSE	Mus musculus	Ensembl ID: ENSMUSG00000038648; DNA-binding domain sequence; TF family: bZIP; Clone Hughes lab.
Creb5_DBD	cAMP-responsive element-binding protein 5, CRE-BPa, CREB-5, Creb5, CREB5_MOUSE, Cyclic AMP-responsive protein 5	Mus musculus	Ensembl ID: ENSMUSG00000053007; DNA-binding domain sequence; TF family: bZIP; Clone Hughes lab.
CTCF_full	11-zinc finger protein, CCCTC-binding factor, CTCF, CTCF_HUMAN, CTCFL paralog, Transcriptional CTCF	Homo sapiens	Ensembl ID: ENSG00000102974; Full protein sequence; TF family: znfC2H2; Clone hORFeome

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.

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