3jre_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF FIS BOUND TO 27 BP DNA F26 CONTAINING A-TRACT AT CENTER
reference	Johnson et al. 'Genes 24 814 2010
source	Escherichia coli
experiment	X-ray (resolution=3.17, R-factor=?)
structural superfamily	Homeodomain-like;
reference complex	5ds9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3jre_A interface=68,77,78,80,82, sdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgTlRkklkkygmn > 3jre_B interface=75,84,85,89, mfeqrvnsdvltvstvnsqdqvtqkplrdsvkqalknyfaqlngqdvndlyelvlaeveqplldmvmqytrgnqTraalmmgiNRgtlRkklkkygmn
interface signature	TNRTR/TNRR

Estimated binding specificities ?

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# IC=9.718 IC/col=0.572 n_of_columns=17

specificity:

A |   3   0   3  24   3   3  24  24  24  24  24   0  13  24   4   0  96
C |   4   0   3  24  18   4  24  24  24  24  24   0  16  24   3  96   0
G |   3  96   3  24  13  86  24  24  24  24  24   0  58  24  86   0   0
T |  86   0  87  24  62   3  24  24  24  24  24  96   9  24   3   0   0

scan!

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updated Fri Dec 15 15:05:16 2023