Use this form to upload a PDB file containing coordinates of a protein-DNA complex and analyze its binding interface. Click on the upload button and select an appropriate input file before submitting.
Links to related resources that might be of interest to users
- TFmodeller: comparative modelling of protein-DNA complexes
- TFcompare: structural alignment of DNA binding protein complexes
- footprintDB: a database with DNA-binding proteins (mostly transcription factors), Position Weight Matrices and DNA Binding Sites extracted from the literature and other repositories.
- protein-DNA interface alignment
- ReadOut: Calculation of Direct and Indirect Readout energy Z-scores for Protein-DNA complexes
- w3dna
- DnaInterfaceScan
- PiDNA
- 3DTF
- ParaDock
- PreMotf
- Protein-RNA Interface Database
- DNAproDB