,Espinosa Angarica,V. et al.(2008) Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9:436. ,Fri Dec 15 06:53:48 2023 entries=611 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , AMINOACIDS THYMINE CYTOSINE ADENINE GUANINE AMINOACIDS ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , N1 O2 N3 O4 N1 O2 N3 N4 N9 N7 N6 N1 N3 N9 N7 O6 N1 N2 N3 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , , ARG R ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ARG R NE -7.107 0.757 -7.107 1.317 -7.107 -0.409 -0.409 -0.409 -7.107 -7.107 1.081 -7.107 -0.305 -7.107 1.593 1.369 -7.107 -7.107 1.082 NE NH1 -7.107 1.855 -0.628 1.768 -7.107 1.381 -7.107 1.892 -7.107 0.388 1.486 -7.107 2.585 -7.107 2.063 2.756 -7.107 1.082 1.593 NH1 NH2 -7.107 2.261 -0.628 2.366 -7.107 1.669 -0.409 0.976 -7.107 1.486 1.997 -7.107 2.092 -7.107 2.180 2.468 -7.107 1.593 0.677 NH2 , LYS K ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LYS K NZ -6.168 0.522 -0.170 1.700 -6.168 1.300 0.048 0.048 -6.168 1.655 2.097 -6.168 1.538 -6.168 2.519 3.005 -6.168 0.846 2.232 NZ , SER S ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SER S OG -5.509 1.550 -0.056 2.338 -5.509 1.768 -5.509 2.105 -5.509 2.343 2.209 -5.509 0.958 -5.509 2.749 2.749 -5.509 1.651 2.344 OG , THR T ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- THR T OG1 -4.920 2.522 2.117 2.809 -4.920 2.048 0.951 2.558 -4.920 2.152 3.251 -4.920 2.845 -4.920 3.422 2.729 -4.920 2.036 2.036 OG1 , ASN N ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASN N OD1 -5.953 1.953 1.666 3.132 -5.953 2.172 -5.953 2.732 -5.953 2.277 2.837 -5.953 -5.953 -5.953 1.873 3.125 -5.953 2.566 3.377 OD1 ND2 -5.953 1.666 1.666 3.275 -5.953 1.885 -5.953 2.395 -5.953 1.989 2.500 -5.953 2.277 -5.953 3.259 2.971 -5.953 -5.953 2.566 ND2 , GLN Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLN Q OE1 -5.631 2.481 -5.631 3.068 -5.631 1.091 -5.631 3.488 -5.631 1.196 3.392 -5.631 1.196 -5.631 2.870 2.870 -5.631 2.177 1.484 OE1 NE2 -5.631 1.565 0.872 2.257 -5.631 2.699 -5.631 -5.631 -5.631 1.888 2.804 -5.631 1.888 -5.631 2.582 2.870 -5.631 1.484 1.484 NE2 , HIS H ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIS H ND1 -4.718 -4.718 -4.718 -4.718 -4.718 -4.718 -4.718 2.515 -4.718 2.619 2.619 -4.718 -4.718 -4.718 -4.718 4.006 -4.718 -4.718 -4.718 ND1 NE2 -4.718 3.682 -4.718 2.296 -4.718 3.208 -4.718 3.208 -4.718 -4.718 2.619 -4.718 2.619 -4.718 3.601 -4.718 -4.718 2.908 -4.718 NE2 , TYR Y ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TYR Y OH -4.913 3.068 1.817 2.914 -4.913 1.343 -4.913 1.343 -4.913 3.238 2.545 -4.913 1.448 -4.913 3.527 3.344 -4.913 2.834 3.344 OH , GLU E ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLU E OE1 -5.318 2.462 2.056 2.749 -5.318 2.680 0.890 3.528 -5.318 -5.318 2.939 -5.318 0.995 -5.318 1.976 2.669 -5.318 1.283 2.669 OE1 OE2 -5.318 2.279 -5.318 2.279 -5.318 1.988 -5.318 3.597 -5.318 1.687 2.785 -5.318 -5.318 -5.318 2.669 2.892 -5.318 1.976 -5.318 OE2 , ASP D ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASP D OD1 -5.268 2.105 2.105 2.616 -5.268 1.919 1.919 2.835 -5.268 2.429 3.122 -5.268 1.331 -5.268 -5.268 3.411 -5.268 2.312 2.718 OD1 OD2 -5.268 1.008 2.393 2.798 -5.268 1.919 -5.268 3.623 -5.268 2.024 3.409 -5.268 1.331 -5.268 2.718 3.228 -5.268 1.620 2.312 OD2 , CYS C ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CYS C SG -2.708 -2.708 -2.708 4.152 -2.708 -2.708 -2.708 4.371 -2.708 -2.708 4.476 -2.708 -2.708 -2.708 4.764 -2.708 -2.708 -2.708 -2.708 SG , MET M ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MET M SD -2.890 3.645 -2.890 -2.890 - - - - -2.890 -2.890 3.968 -2.890 3.968 -2.890 4.257 -2.890 -2.890 -2.890 -2.890 SD , TRP W ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TRP W NE1 -3.219 4.848 -3.219 -3.219 - - - - -3.219 -3.219 4.074 -3.219 -3.219 -3.219 4.362 4.362 -3.219 -3.219 5.055 NE1