,Espinosa Angarica,V. et al.(2008) Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9:436. ,Fri Dec 15 06:53:48 2023 entries=611 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , AMINOACIDS THYMINE CYTOSINE ADENINE GUANINE AMINOACIDS ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , C2 C4 C5 C5M/C7 C6 C2 C4 C5 C6 C8 C5 C6 C2 C4 C8 C5 C6 C2 C4 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , , ARG R ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ARG R CB 0 0 0 4 0 - - - - - - - - - - - - - - CB CG 0 0 0 4 0 - - - - - - - - - - - - - - CG CZ 0 0 0 12 0 - - - - - - - - - - - - - - CZ , LYS K ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LYS K CB 0 0 0 6 0 - - - - - - - - - - - - - - CB CG 0 0 0 5 0 - - - - - - - - - - - - - - CG CE 0 0 0 8 0 - - - - - - - - - - - - - - CE , SER S ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SER S CB 0 0 0 18 0 - - - - - - - - - - - - - - CB , THR T ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- THR T CB 0 0 0 6 0 - - - - - - - - - - - - - - CB CG2 0 0 0 12 0 - - - - - - - - - - - - - - CG2 , ASN N ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASN N CB 0 0 0 3 0 - - - - - - - - - - - - - - CB CG 0 0 0 6 0 - - - - - - - - - - - - - - CG , GLN Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLN Q CB 0 0 0 2 0 - - - - - - - - - - - - - - CB CG 0 0 0 8 0 - - - - - - - - - - - - - - CG , HIS H ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIS H CB 0 0 0 3 0 - - - - - - - - - - - - - - CB CG 0 0 0 1 0 - - - - - - - - - - - - - - CG CD2 0 0 0 0 0 - - - - - - - - - - - - - - CD2 , TYR Y ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TYR Y CB 0 0 0 6 0 - - - - - - - - - - - - - - CB CG 0 0 0 2 0 - - - - - - - - - - - - - - CG CD1 0 0 0 5 0 - - - - - - - - - - - - - - CD1 CD2 0 0 0 2 0 - - - - - - - - - - - - - - CD2 CZ 0 0 0 12 0 - - - - - - - - - - - - - - CZ , ALA A ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ALA A CB 0 0 0 32 0 - - - - - - - - - - - - - - CB , GLU E ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLU E CB 0 0 0 2 0 - - - - - - - - - - - - - - CB CG 0 0 0 5 0 - - - - - - - - - - - - - - CG , ILE I ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ILE I CB 0 0 0 0 0 - - - - - - - - - - - - - - CB CG1 0 0 0 2 0 - - - - - - - - - - - - - - CG1 CG2 0 0 0 16 0 - - - - - - - - - - - - - - CG2 CD1 0 0 0 0 0 - - - - - - - - - - - - - - CD1 , ASP D ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASP D CB 0 0 0 4 0 - - - - - - - - - - - - - - CB CG 0 0 0 4 0 - - - - - - - - - - - - - - CG , VAL V ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- VAL V CB 0 0 0 2 0 - - - - - - - - - - - - - - CB CG1 0 0 0 16 0 - - - - - - - - - - - - - - CG1 CG2 0 0 0 17 0 - - - - - - - - - - - - - - CG2 , CYS C ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CYS C CB 0 0 0 2 0 - - - - - - - - - - - - - - CB , PHE F ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PHE F CB 0 0 0 5 0 - - - - - - - - - - - - - - CB CG 0 0 0 3 0 - - - - - - - - - - - - - - CG CD1 0 0 0 1 0 - - - - - - - - - - - - - - CD1 CD2 0 0 0 10 0 - - - - - - - - - - - - - - CD2 CZ 0 0 0 18 0 - - - - - - - - - - - - - - CZ , LEU L ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LEU L CB 0 0 0 3 0 - - - - - - - - - - - - - - CB CG 0 0 0 3 0 - - - - - - - - - - - - - - CG CD1 0 0 0 11 0 - - - - - - - - - - - - - - CD1 CD2 0 0 0 11 0 - - - - - - - - - - - - - - CD2 , MET M ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MET M CB 0 0 0 2 0 - - - - - - - - - - - - - - CB CG 0 0 0 2 0 - - - - - - - - - - - - - - CG CE 0 0 0 6 0 - - - - - - - - - - - - - - CE , TRP W ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TRP W CB 0 0 0 1 0 - - - - - - - - - - - - - - CB CG 0 0 0 1 0 - - - - - - - - - - - - - - CG CD1 0 0 0 6 0 - - - - - - - - - - - - - - CD1 CD2 0 0 0 1 0 - - - - - - - - - - - - - - CD2 , PRO P ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PRO P CB 0 0 0 7 0 - - - - - - - - - - - - - - CB CG 0 0 0 12 0 - - - - - - - - - - - - - - CG ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------- , AMINOACID CODE TOTAL AA TOTAL CONTACTS ,----------------------------------------------------- , ARG R 11010 1219 , LYS K 11888 476 , SER S 10262 246 , THR T 8397 136 , ASN N 7031 384 , GLN Q 7159 278 , GLY G 10321 0 , HIS H 4292 111 , TYR Y 5711 135 , ALA A 12310 32 , GLU E 11974 203 , ILE I 9986 18 , ASP D 8993 193 , VAL V 10792 35 , CYS C 2504 14 , PHE F 6858 37 , LEU L 16935 28 , MET M 3468 17 , TRP W 2246 24 , PRO P 7261 19 , ,----------------------------- ,BASE TOTAL ,----------------------------- , DT 7330 , DC 5889 , DA 6629 , DG 5959 ,----------------------------------------------------- ,Total aminoacids = 169398 ,Total bases = 25807