,Espinosa Angarica,V. et al.(2008) Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9:436. ,Fri Dec 15 06:53:48 2023 entries=611 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , AMINOACIDS THYMINE CYTOSINE ADENINE GUANINE AMINOACIDS ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , N1 O2 N3 O4 N1 O2 N3 N4 N9 N7 N6 N1 N3 N9 N7 O6 N1 N2 N3 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , , ARG R ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ARG R NE -7.107 2.010 -7.107 1.450 -7.107 2.074 -7.107 -7.107 -7.107 -7.107 -7.107 -7.107 1.640 -7.107 3.449 3.074 -7.107 -7.107 1.369 NE NH1 -7.107 3.359 -7.107 2.549 -7.107 2.847 1.199 -7.107 -7.107 1.997 -7.107 -7.107 2.872 -7.107 4.719 4.745 -7.107 -7.107 2.381 NH1 NH2 -7.107 3.302 -7.107 2.772 -7.107 2.885 1.787 -7.107 -7.107 1.304 -7.107 -7.107 2.527 -7.107 4.980 5.148 -7.107 -7.107 2.816 NH2 , LYS K ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LYS K NZ -6.168 2.798 -6.168 2.798 -6.168 2.298 0.453 -6.168 -6.168 2.291 -6.168 -6.168 2.166 -6.168 4.201 4.509 -6.168 -6.168 1.134 NZ , SER S ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SER S OG -5.509 2.884 1.550 2.773 -5.509 1.951 1.545 2.867 -5.509 3.482 2.566 -5.509 2.343 -5.509 3.496 3.191 -5.509 2.632 2.162 OG , THR T ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- THR T OG1 -4.920 2.117 1.829 3.032 -4.920 2.048 0.951 3.146 -4.920 2.663 2.152 -4.920 1.056 -4.920 2.729 3.288 -4.920 3.134 1.344 OG1 , ASN N ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASN N OD1 -5.953 -5.953 2.965 -5.953 -5.953 -5.953 -5.953 3.271 -5.953 -5.953 4.697 -5.953 -5.953 -5.953 -5.953 -5.953 -5.953 3.744 -5.953 OD1 ND2 -5.953 3.702 -5.953 4.122 -5.953 3.494 -5.953 -5.953 -5.953 4.579 -5.953 -5.953 2.970 -5.953 3.577 4.398 -5.953 -5.953 3.818 ND2 , GLN Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLN Q OE1 -5.631 -5.631 2.663 -5.631 -5.631 -5.631 -5.631 3.575 -5.631 -5.631 4.721 -5.631 -5.631 -5.631 -5.631 -5.631 -5.631 4.374 -5.631 OE1 NE2 -5.631 3.068 -5.631 4.049 -5.631 2.882 1.091 -5.631 -5.631 4.750 -5.631 -5.631 3.141 -5.631 3.275 4.528 -5.631 -5.631 3.881 NE2 , HIS H ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIS H ND1 -4.718 -4.718 2.296 3.682 -4.718 2.515 2.515 2.515 -4.718 -4.718 2.619 -4.718 -4.718 -4.718 4.854 4.854 -4.718 -4.718 -4.718 ND1 NE2 -4.718 4.087 -4.718 4.375 -4.718 4.124 -4.718 2.515 -4.718 3.312 -4.718 -4.718 3.312 -4.718 5.306 6.204 -4.718 2.908 2.908 NE2 , TYR Y ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TYR Y OH -4.913 2.509 1.125 2.732 -4.913 2.728 2.035 3.287 -4.913 3.238 3.643 -4.913 3.238 -4.913 3.344 2.834 -4.913 3.814 2.429 OH , GLU E ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLU E OE1 -5.318 -5.318 1.364 -5.318 -5.318 -5.318 -5.318 4.499 -5.318 -5.318 2.092 -5.318 -5.318 -5.318 -5.318 -5.318 -5.318 3.362 -5.318 OE1 OE2 -5.318 -5.318 2.056 -5.318 -5.318 -5.318 -5.318 4.107 -5.318 -5.318 2.380 -5.318 -5.318 -5.318 -5.318 -5.318 -5.318 3.362 -5.318 OE2 , ASP D ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASP D OD1 -5.268 -5.268 1.008 -5.268 -5.268 -5.268 -5.268 4.169 -5.268 -5.268 2.716 -5.268 -5.268 -5.268 -5.268 -5.268 -5.268 4.017 -5.268 OD1 OD2 -5.268 -5.268 2.798 -5.268 -5.268 -5.268 -5.268 4.836 -5.268 -5.268 3.122 -5.268 -5.268 -5.268 -5.268 -5.268 -5.268 4.258 -5.268 OD2 , CYS C ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CYS C SG -2.708 -2.708 -2.708 5.538 -2.708 4.371 -2.708 -2.708 -2.708 4.476 4.476 -2.708 4.476 - - - - - - SG , MET M ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MET M SD -2.890 -2.890 3.645 -2.890 - - - - -2.890 -2.890 4.661 -2.890 -2.890 - - - - - - SD , TRP W ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TRP W NE1 -3.219 4.848 -3.219 3.750 -3.219 5.067 -3.219 -3.219 - - - - - - - - - - - NE1