,Espinosa Angarica,V. et al.(2008) Prediction of TF target sites based on atomistic models of protein-DNA complexes. BMC Bioinformatics, 9:436. ,Fri Dec 15 06:53:48 2023 entries=611 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , AMINOACIDS THYMINE CYTOSINE ADENINE GUANINE AMINOACIDS ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , N1 O2 N3 O4 N1 O2 N3 N4 N9 N7 N6 N1 N3 N9 N7 O6 N1 N2 N3 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- , , ARG R ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ARG R NE 0 14 0 8 0 12 0 0 0 0 0 0 7 0 32 22 0 0 4 NE NH1 0 54 0 24 0 26 5 0 0 10 0 0 24 0 114 117 0 0 11 NH1 NH2 0 51 0 30 0 27 9 0 0 5 0 0 17 0 148 175 0 0 17 NH2 , LYS K ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- LYS K NZ 0 39 0 39 0 19 3 0 0 17 0 0 15 0 86 117 0 0 4 NZ , SER S ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SER S OG 0 19 5 17 0 6 4 15 0 25 10 0 8 0 19 14 0 8 5 OG , THR T ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- THR T OG1 0 4 3 10 0 3 1 9 0 5 3 0 1 0 4 7 0 6 1 OG1 , ASN N ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASN N OD1 0 0 11 0 0 0 0 12 0 0 45 0 0 0 0 0 0 13 0 OD1 ND2 0 23 0 35 0 15 0 0 0 40 0 0 8 0 11 25 0 0 14 ND2 , GLN Q ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLN Q OE1 0 0 6 0 0 0 0 12 0 0 34 0 0 0 0 0 0 18 0 OE1 NE2 0 9 0 24 0 6 1 0 0 35 0 0 7 0 6 21 0 0 11 NE2 , HIS H ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- HIS H ND1 0 0 1 4 0 1 1 1 0 0 1 0 0 0 7 7 0 0 0 ND1 NE2 0 6 0 8 0 5 0 1 0 2 0 0 2 0 11 27 0 1 1 NE2 , TYR Y ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TYR Y OH 0 4 1 5 0 4 2 7 0 6 9 0 6 0 5 3 0 8 2 OH , GLU E ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GLU E OE1 0 0 2 0 0 0 0 37 0 0 3 0 0 0 0 0 0 8 0 OE1 OE2 0 0 4 0 0 0 0 25 0 0 4 0 0 0 0 0 0 8 0 OE2 , ASP D ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ASP D OD1 0 0 1 0 0 0 0 19 0 0 4 0 0 0 0 0 0 11 0 OD1 OD2 0 0 6 0 0 0 0 37 0 0 6 0 0 0 0 0 0 14 0 OD2 , CYS C ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CYS C SG 0 0 0 4 0 1 0 0 0 1 1 0 1 - - - - - - SG , MET M ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- MET M SD 0 0 1 0 - - - - 0 0 2 0 0 - - - - - - SD , TRP W ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TRP W NE1 0 3 0 1 0 3 0 0 - - - - - - - - - - - NE1 ,----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ,----------------------------------------------------- , AMINOACID CODE TOTAL AA TOTAL CONTACTS ,----------------------------------------------------- , ARG R 11010 1219 , LYS K 11888 476 , SER S 10262 246 , THR T 8397 136 , ASN N 7031 384 , GLN Q 7159 278 , GLY G 10321 0 , HIS H 4292 111 , TYR Y 5711 135 , ALA A 12310 32 , GLU E 11974 203 , ILE I 9986 18 , ASP D 8993 193 , VAL V 10792 35 , CYS C 2504 14 , PHE F 6858 37 , LEU L 16935 28 , MET M 3468 17 , TRP W 2246 24 , PRO P 7261 19 , ,----------------------------- ,BASE TOTAL ,----------------------------- , DT 7330 , DC 5889 , DA 6629 , DG 5959 ,----------------------------------------------------- ,Total aminoacids = 169398 ,Total bases = 25807