(updated: Wed Dec 6 16:26:23 2017)

Library of position-weight matrices (2995 PWMs):

readout + contact PWMsCONSENSUSTRANSFAC

Library of protein-DNA complexes:

full set of protein sequences with interface residues in headerFASTA file (monomers only)
set of 95%ID non-redundant protein sequences with interface residues in headerFASTA file (monomers only)
set of 50%ID + 70%IID non-redundant complexestext file (list) | PDB.tgz
set of sequence-specific interface atomic contacts for each complextext file
set of sequence-specific interface atomic contacts and their contacted nucleotidestext file (monomers & multimers)

Atomic interaction tables useful for interface specificity calculations:

hydrogen bondsweightsoccurrences
water-mediated hydrogen bondsweightsoccurrences
hydrophobic interactionsweightsoccurrences