interface graph thumbnail
legend  pdf

structure nameTHE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1)
(DNA binding protein)
referenceKutnowski et al. 'Nucleic 47 8860 2019
sourceHalobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
experimentX-ray (resolution=2.00, R-factor=0.209)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyTranscriptional regulator PadRlike family;
multimeric complexes6qfd_AB 6qh0_AB 6qh0_CD 6qil_AB 6qil_CD 6qua_AB 6qua_CD
redundant complexes6qfd_B 6qh0_A 6qua_C
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureLNHRYPR

Estimated binding specificities ?

contactlogo
# IC=6.487 IC/col=0.811 n_of_columns=8 specificity:   
A |  11  69   0  24   0   0   0  69
C |   8  11   0  24   0   0   0  11
G |  69   8  96  24   0  96   8   8
T |   8   8   0  24  96   0  88   8
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ----LT----NTHG--RT--YTPT--------------------RT--   L                                                        +---------6qil_A    
                                                                                                    +---------2 
  --------------------NAST--RGHT----STLT------KA--   L                                              !         +---------2c6y_A    
                                                                                                  +-5 
  ------------YAQTTC----QC------------------------   L                                            ! !                  +5k5q_D    
                                                                                                  ! !   +--------------1 
  ----------ST--PTTC--STQC------RA----------------   L                                          +-6 +---4              +1ddn_B    
                                                                                                ! !     ! 
  ----------------------NAST--HT----STLT----------   L                                          ! !     +---------------7cby_C    
                                                                                              +-7 ! 
  ----LT----NTHGTA----YTRG------------------KG--QA                                            ! ! +--------------------2efw_A    
                                                                                            +-8 ! 
  ------RA--ST--ECTT--RAKA------------------HT----                                          ! ! +----------------------7oz3_B    
                                                                                          +-9 ! 
  QA--------------------------------------------NG                                        ! ! +-----------------------7k63_U    
                                                                                       +-10 ! 
  --RC------------------------------------------SG                                     !  ! +------------------------7cow_T    
                                                                                    +-11  !  
  --------------------NAST--RTHT----ST------------                                  !  !  +-------------------------3co7_C    
                                                                                 +-12  !  
  --------------------NAST--RGHTNT--STLT----------   L                           !  !  +-------------------------7fj2_B    
                                                                                 !  !  
  ------ETNTSCRGHC----RT--------------------QA----                            +-13  +--------------------------5d4s_B    
                                                                              !  !  
  ----------------QTNAST--RGHT----STLA------------   L                        !  !           +--------------2hdc_A    
                                                                           +-14  +-----------3 
  ----------TC--TC--KGTCHT--ST--------------------   L                     !  !              +--------------7ve5_B    
                                                                        +-15  !  
  ----------------------------YG------------------                      !  !  +---------------------------3eyi_B    
                                                                     +-16  !  
  ----------NT--TCTA------------------------RT----   L               !  !  +----------------------------5zux_A    
                                                                  +-17  !  
  ----------------------RG----YG------------------                !  !  +----------------------------1qbj_C    
                                                               +-18  !  
  ----------RG----DTVT----STRG------------WT------   L         !  !  +----------------------------6lxn_A    
                                                            +-19  !  
  --------------DCKT----RGST--RGYA----------------   L      !  !  +----------------------------4bnc_A    
                                                         +-20  !  
  ----YA----KTPTPG----YTRG------------------------   L   !  !  +----------------------------4mtd_D    
                                                       -21  !  
  --------------DCKT----RGAT--RCYA----------------   L   !  +----------------------------5e8i_D    
                                                         !  
  --------------TTHT----KG--------------RC--------   L   +----------------------------7b0c_A    
                                                       

home
updated Tue Dec 19 14:18:32 2023