structure name | THE COMPLEX STRUCTURE OF HSROSR-S1 (VNG0258H/ROSR-S1) (DNA binding protein) |
reference | Kutnowski et al. 'Nucleic 47 8860 2019 |
source | Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) / Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) |
experiment | X-ray (resolution=2.00, R-factor=0.209) |
structural superfamily | "Winged helix" DNA-binding domain; |
sequence family | Transcriptional regulator PadRlike family; |
multimeric complexes | 6qfd_AB 6qh0_AB 6qh0_CD 6qil_AB 6qil_CD 6qua_AB 6qua_CD |
redundant complexes | 6qfd_B 6qh0_A 6qua_C |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | LNHRYPR |
Estimated binding specificities ?
contact |
A | 11 69 0 24 0 0 0 69 C | 8 11 0 24 0 0 0 11 G | 69 8 96 24 0 96 8 8 T | 8 8 0 24 96 0 88 8scan! |
Dendrogram of similar interfaces ?
matrix format----LT----NTHG--RT--YTPT--------------------RT-- L +---------6qil_A +---------2 --------------------NAST--RGHT----STLT------KA-- L ! +---------2c6y_A +-5 ------------YAQTTC----QC------------------------ L ! ! +5k5q_D ! ! +--------------1 ----------ST--PTTC--STQC------RA---------------- L +-6 +---4 +1ddn_B ! ! ! ----------------------NAST--HT----STLT---------- L ! ! +---------------7cby_C +-7 ! ----LT----NTHGTA----YTRG------------------KG--QA ! ! +--------------------2efw_A +-8 ! ------RA--ST--ECTT--RAKA------------------HT---- ! ! +----------------------7oz3_B +-9 ! QA--------------------------------------------NG ! ! +-----------------------7k63_U +-10 ! --RC------------------------------------------SG ! ! +------------------------7cow_T +-11 ! --------------------NAST--RTHT----ST------------ ! ! +-------------------------3co7_C +-12 ! --------------------NAST--RGHTNT--STLT---------- L ! ! +-------------------------7fj2_B ! ! ------ETNTSCRGHC----RT--------------------QA---- +-13 +--------------------------5d4s_B ! ! ----------------QTNAST--RGHT----STLA------------ L ! ! +--------------2hdc_A +-14 +-----------3 ----------TC--TC--KGTCHT--ST-------------------- L ! ! +--------------7ve5_B +-15 ! ----------------------------YG------------------ ! ! +---------------------------3eyi_B +-16 ! ----------NT--TCTA------------------------RT---- L ! ! +----------------------------5zux_A +-17 ! ----------------------RG----YG------------------ ! ! +----------------------------1qbj_C +-18 ! ----------RG----DTVT----STRG------------WT------ L ! ! +----------------------------6lxn_A +-19 ! --------------DCKT----RGST--RGYA---------------- L ! ! +----------------------------4bnc_A +-20 ! ----YA----KTPTPG----YTRG------------------------ L ! ! +----------------------------4mtd_D -21 ! --------------DCKT----RGAT--RCYA---------------- L ! +----------------------------5e8i_D ! --------------TTHT----KG--------------RC-------- L +----------------------------7b0c_A |
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updated Tue Dec 19 14:18:32 2023