6qh0_AB : 3D-footprint complex

structure name	THE COMPLEX STRUCTURE OF HSROSR-S5 (VNG0258H/ROSR-S5)
reference	Kutnowski et al. 'Nucleic 47 8860 2019
source	Halobacterium salinarum NRC-1
experiment	X-ray (resolution=2.44, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6qil_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qh0_A interface=28,43,44,46,48,49,68, darsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale > 6qh0_B interface=29,44,45,47,49,50,69, pdarsdardltafqkniltvlgeearygLaikreleeyygeevNHgRlYPnlddlvnkglvekseldkRtneyaltnegfdavvddlewtlskfvadadrrervetivaddaaale
interface signature	LNHRYPR/LNHRYPR

Estimated binding specificities ?

readout + contact

# IC=8.677 IC/col=0.434 n_of_columns=20

specificity:

A |   0   0   8  24  24  24  24  24  24  24  24  24  24  70   0  96  24   6   0   6
C |   0   6   6  24  24  24  24  24  24  24  24  24  24   6  96   0  24   8   6  78
G |   0  90   6  24  24  24  24  24  24  24  24  24  24  12   0   0  24   6   0   6
T |  96   0  76  24  24  24  24  24  24  24  24  24  24   8   0   0  24  76  90   6

scan!

home
updated Sat Dec 16 16:33:57 2023