interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF H.PYLORI NIKR IN COMPLEX WITH DNA
referencede Serrano et al. 'To ? ? ?
sourceHelicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695) / Helicobacter pylori (strain ATCC 700392 / 26695)
experimentX-ray (resolution=2.80, R-factor=?)
structural superfamilyACT-like;Ribbon-helix-helix;
reference complex6mrj_D
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRSS/RSSS/RSS/RSSR

Estimated binding specificities ?

readout + contactlogo
# IC=15.088 IC/col=0.559 n_of_columns=27 specificity:   
A |   0   1  92  24   0  96   0   9  24  24  24  24  24  24  24  24  24  24  24  63   0   0   0   9   1  96   1
C |   0   1   0  24   3   0  85  11  24  24  24  24  24  24  24  24  24  24  24  11   0   0   0  17   3   0  42
G |   0   3   3  24   0   0   0   9  24  24  24  24  24  24  24  24  24  24  24  13  96   0  93  19   0   0   0
T |  96  91   1  24  93   0  11  67  24  24  24  24  24  24  24  24  24  24  24   9   0  96   3  51  92   0  53
scan!

home
updated Sat Dec 16 14:18:39 2023