interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameHUMAN LIGIV CATALYTIC DOMAIN WITH BOUND DNA-ADENYLATE INTERMEDIATE IN CLOSED CONFORMATION
(DNA ligase 4)
referenceSchellenberg et al. 'Nat 9 2642 2018
sourceHomo sapiens
experimentX-ray (resolution=2.40, R-factor=0.204)
structural superfamilyDNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;ATP-dependent DNA ligase DNA-binding domain;
sequence familyATP dependent DNA ligase domain; ATP dependent DNA ligase C terminal re; DNA ligase N terminus 155;
redundant complexes6bkf_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----KT----ST--FG--                     +-----6bkg_A    
                                  +------3 
  YC----------RCFG--              !      !  +--3l2p_A    
                                  !      +--1 
  RTHT----KGTT--FG--   L   +------4         +--6p0c_A    
                           !      ! 
  ----------SA--FC--       !      !        +---6rar_I    
                         --5      +--------2 
  ------------FGLGIT       !               +---6dt1_A    
                           ! 
  ------NCKG----QT--       +-------------------6iml_A

home
updated Tue Dec 19 12:17:51 2023