structure name | THE CRYO-EM STRUCTURE OF A BACTERIAL CLASS I TRANSCRIPTION ACTIVATION COMPLEX (RNA POLYMERASE SIGMA FACTOR RPOD) |
source | ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) |
experiment | NMR |
structural superfamily | Sigma2 domain of RNA polymerase sigma factors;Sigma3 and sigma4 domains of RNA polymerase sigma factors; |
sequence family | Sigma70, nonessential region; Sigma70 region 3; Sigma70 region 2; Sigma70, region 4; Sigma70 factor, region 12; |
redundant complexes | 6ca0 4yln 4ylo 4ylp 3iyd |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | VRMRMLNRLNRFERYKSTYTWWQTRIVHENKEIDDLETERR |
Estimated binding specificities ?
contact |
A | 3 24 96 0 0 96 0 0 24 0 96 0 10 96 7 96 24 24 24 24 24 24 24 24 24 24 24 24 24 11 0 0 24 24 7 3 C | 3 24 0 0 0 0 0 0 24 0 0 0 72 0 7 0 24 24 24 24 24 24 24 24 24 24 24 24 24 11 0 96 24 24 7 3 G | 87 24 0 96 96 0 0 0 24 0 0 96 7 0 7 0 24 24 24 24 24 24 24 24 24 24 24 24 24 61 0 0 24 24 72 84 T | 3 24 0 0 0 0 96 96 24 96 0 0 7 0 75 0 24 24 24 24 24 24 24 24 24 24 24 24 24 13 96 0 24 24 10 6scan! |
Dendrogram of similar interfaces ?
matrix formatVTRTMTRGMGLTNTRGLTNTRT----FAEARAYAKTSTTAYATAWTWT--QATARTITVTHTEGITNT----------------KTET------IGDG--DG----LTEGTT--ETRCRC------ L +-------------6b6h_F +--------1 ------------NTRGLT--RC----FADAKAYA--SCTAYATCWTWT--QT------VTHTEA----RCRCEC------------EGIASAQAIC--EGDGSGFG----TTRGECRTRCQT---- L +--2 +-------------6edt_F ! ! ------------NTRTLT----RTKTFAEARAFA--SATAYATAWTWTRA---------------------------------------------------------------------------- L +--3 +----------------------3ugo_A ! ! ----------------------------------------------------------------------------------------------------------LTETTTRAECRCRCQC---- L +-4 +-------------------------3n97_A ! ! ----------------------------------------------------------------------------------------------------------YG--------TGRGSGFTRG L --5 +----------------------------2h27_A ! --------------------------------------------------------------------------NGRGTTRGKT------------------------------------------ L +----------------------------5ds9_A |
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updated Mon Dec 18 14:29:31 2023