structure name | CRYSTAL STRUCTURE OF CTCF ZFS6-11-GB7CSE (Transcriptional repressor CTCF) |
reference | Wang et al. 'Cell 27 1365 2017 |
source | Homo sapiens |
experiment | X-ray (resolution=2.96, R-factor=0.269) |
structural superfamily | beta-beta-alpha zinc fingers; |
sequence family | Zinc finger, C2H2 type; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | DRR |
Estimated binding specificities ?
readout + contact |
A | 90 4 0 0 0 24 24 24 24 24 24 24 24 0 0 3 92 18 24 0 0 88 C | 3 92 0 0 14 24 24 24 24 24 24 24 24 1 0 3 0 73 24 0 96 3 G | 0 0 19 96 62 24 24 24 24 24 24 24 24 77 96 6 0 3 24 96 0 2 T | 3 0 77 0 20 24 24 24 24 24 24 24 24 18 0 84 4 2 24 0 0 3scan! |
Dendrogram of similar interfaces ?
matrix format------TG--RA--SCDC------QGRGHTMG--QG----LGLC--TTRG---------- L +---------------5yel_A ! ------------------------QAATHG----RG--DCNA--TT--RGRTDAAT---- L +-4 +2i13_A ! ! +--1 ------------------------WCSCVGRG--DC--SGNA----------STHG--RG L ! +------------2 +5v3g_A +------5 ! ------------------------DGYCKGRGTCQA----TC------RA--SCDC---- L ! ! +--5t0u_A ! ! ------------------------RA--NC------ATSGDC--KG--DCPTSGSARTKG L +---6 ! +-------------2gli_A ! ! +--3 RGSTYGYC--QC--TGSTRAYT-------------------------------------- L ! ! +-------------3uk3_C --7 ! --NTSTNAVTQTSTSGKG--RGKG------------------------------------ L ! +-----------------------6u9q_A ! ----------RG--SGDC------------------------------------------ L +---------------------------5k5l_F |
home
updated Tue Dec 19 12:02:03 2023