| structure name | CRYSTAL STRUCTURE OF CTCF ZFS2-8-HS5-1AE (Transcriptional repressor CTCF) |
| reference | Wang et al. 'Cell 27 1365 2017 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.81, R-factor=0.225) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RYESKRTYKRTQSTRSDV |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 0 0 0 13 0 0 0 16 24 0 C | 96 0 96 96 96 16 96 0 0 54 24 0 G | 0 96 0 0 0 13 0 0 96 13 24 96 T | 0 0 0 0 0 54 0 96 0 13 24 0scan! |
Dendrogram of similar interfaces ?
matrix formatRGYG--EC--SCKGRG--TCYCKA--RGTCQAST--TC----RCSCDCVT L +----------5yef_B ! ----------------DC--YCKG--RG--QA----TC----RCSCDCVT L +----3 +-------5k5i_A ! ! +-1 ----NGKT--WTKG------HTHG--RGTGTT--ACNAKGRG-------- L ! +-2 +-------1tf3_A +------4 ! ------EC--SGKGRGDG--YCKG--RG--QA----TC----RASCDCVT L ! ! +--------5k5h_A +-5 ! ----RGST--YGYC--QC--TGSTRGYT---------------------- ! ! +---------------4is1_C +----6 ! ----------------QA----TC--RG--RG--YCRT------------ L ! ! +----------------------7txc_E --7 ! ----------------NT--STNA--VT--QTSTSGKGRG---------- L ! +-----------------------6u9q_A ! ----QT--AG--KGRGRG--DCKG-------------------------- L +----------------------------7n5w_A |
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updated Thu Dec 22 22:37:06 2022