interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'beta and beta-prime subunits of DNA dependent RNA-polymerases', as these often contain single-stranded DNA molecules which accumulate many base contacts which distort the calculations.


Dendrogram of similar interfaces ?

matrix format
structure nameRNA POLYMERASE II ELONGATION COMPLEX BOUND WITH SPT5 KOW5 AND ELF1
referenceShirouzu et al. Science 357 921 2017
experimentX-ray (resolution=3.00, R-factor=0.196)
structural superfamilybeta and beta-prime subunits of DNA dependent RNA-polymerase;
sequence familyRNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 2; RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 7; RNA polymerase Rpb1, domain 4;
redundant complexes6inq 6ir9 6a5l 6a5o 6a5p 6a5r 6a5t 6a5u 6j4w 6j4x 6j4y 6j4z 6j50 6j51 5xon
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  TAAA----------------           +-----------------------------6kf9_A    
                               +-1 
  ------------------RT       +-2 +-----------------------------6kf9_C    
                             ! ! 
  ----KA----VC----RC--   L --3 +-----------------------------2axy_C    
                             ! 
  ------KGCA--YTRC----   L   +-----------------------------1jj4_B

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updated Mon Dec 18 14:00:26 2023