interface graph thumbnail
legend  pdf

structure nameEPSTEIN-BARR VIRUS ZTA DNA BINDING DOMAIN HOMODIMER IN COMPLEX WITH METHYLATED DNA
(Zta transcription factor)
referenceHorton et al. 'Nucleic 45 2503 2017
sourceEpstein-Barr virus
experimentX-ray (resolution=2.25, R-factor=0.261)
structural superfamilyLeucine zipper domain;
sequence familybZIP transcription factor;
multimeric complexes2c9l_YZ 2c9n_YZ 5szx_AB 7nx5_AB
redundant complexes7nx5
reference complex2c9l_Z
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: ZEBRA
TGAGTCAPubMed5szx_AB(1.18e-02)
TGAGCCAPubMed5szx_AB(6.27e-05)
TGAGCAAPubMed5szx_AB(3.19e-08)

Dendrogram of similar interfaces ?

matrix format
  
  ----NG--AT--STRG----                +-----5szx_B    
                                    +-3 
  ------RA--NAAAVTSTRG   L          ! !     +1nwq_C    
                                    ! +-----1 
  --RANANCATVTSTRG----   L   +------4       +1gu4_B    
                             !      ! 
  ----NC--AAAT--RT----   L   !      !       +1a02_F    
                           --5      +-------2 
  --RANA--AAVTSTRG----   L   !              +1h89_A    
                             ! 
  RG--NC--YGATCTRG----   L   +--------------2wt7_B    
                           

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updated Mon Dec 18 13:31:46 2023