5orq_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF DESIGNED CPPR-TELO1 IN COMPLEX WITH SSDNA (CPPR-TELO1)
reference	Rackham et al. 'Nat 9 2212 2018
source	SYNTHETIC CONSTRUCT
experiment	X-ray (resolution=1.95, R-factor=0.191)
structural superfamily	HCP-like;TPR-like;
sequence family	PPR repeat; Tetratricopeptide repeat;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5orq_A interface=38,41,72,73,76,106,107,108,111,141,142,143,144,146,176,177,178,179,181,211,213,214,216,248,251,282,283,286,287,316,317,318,321,351,353,354, nsvtyntlisglgkagrleealelfeemkekgivpdvVtyNtlisglgkagrleealelfeemkekgivpdVVtyTtlisglgkagrleealelfeemkekgivpNVVtyTtlisglgkagrleealelfeemkekgivpDVVTyTtlisglgkagrleealelfeemkekgivpDVVTyTtlisglgkagrleealelfeemkekgivpDvVTyNtlisglgkagrleealelfeemkekgivpdvVtyNtlisglgkagrleealelfeemkekgivpdVVtyTTlisglgkagrleealelfeemkekgivpNVVtyTtlisglgkagrleealelfeemkekgivpDvVTyttlisglgk
interface signature	VNVVTNVVTDVVTTDVVTTDVTNVNVVTTNVVTDVT

Estimated binding specificities ?

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# IC=12.209 IC/col=1.221 n_of_columns=10

specificity:

A |  14   0  96   0   0   0   0   0  96   0
C |  14   0   0   0   0   0   0   0   0   0
G |  14   0   0  96  96  96   0   0   0  96
T |  54  96   0   0   0   0  96  96   0   0

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updated Tue Dec 19 11:14:29 2023