structure name | CRYO EM STRUCTURE OF THE CONJUGATIVE RELAXASE TRAI OF THE F/R1 PLASMID SYSTEM (DNA HELICASE I) |
source | ESCHERICHIA COLI |
experiment | NMR |
structural superfamily | Origin of replication-binding domain, RBD-like;P-loop containing nucleoside triphosphate hydrolases; |
sequence family | TrwC relaxase; |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | MIRHRQRRTPWTKSFKHREAITRDLHKM |
Estimated binding specificities ?
contact |
A | 0 0 0 0 0 0 24 11 0 0 0 9 0 0 0 11 C | 0 0 0 0 0 0 24 9 0 0 0 9 0 0 0 9 G | 0 0 0 0 0 0 24 9 0 0 0 9 0 0 0 9 T | 96 96 96 96 96 96 24 67 96 96 96 69 96 96 96 67scan! |
Dendrogram of similar interfaces ?
matrix format------------------RG---------------------- L +-----------------------------6lui_A +-1 ------------RTPTFT------------------------ L +-2 +-----------------------------6s3h_A ! ! ------------------------RT---------------- +-3 +-----------------------------7k5y_U ! ! ------------------------------RC---------- +-4 +-----------------------------7cow_T ! ! --NASTHTNTLT------------------------------ L +-5 +-----------------------------7fj2_B ! ! QT---------------------------------------- +-6 +-----------------------------6m6b_M ! ! --------------------TC-------------------- +-7 +-----------------------------4ass_H ! ! ----------------------TTHTKG-------------- L +-8 +-----------------------------7b0c_A ! ! --------------------------------KTPTPGYTRG L --9 +-----------------------------4mtd_D ! ----------------------------SA------------ L +-----------------------------6qec_A |
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updated Tue Dec 19 10:54:53 2023