interface graph thumbnail
legend  pdf

structure nameCRYO EM STRUCTURE OF THE CONJUGATIVE RELAXASE TRAI OF THE F/R1 PLASMID SYSTEM
(DNA HELICASE I)
sourceESCHERICHIA COLI
experimentNMR
structural superfamilyOrigin of replication-binding domain, RBD-like;P-loop containing nucleoside triphosphate hydrolases;
sequence familyTrwC relaxase;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureMIRHRQRRTPWTKSFKHREAITRDLHKM

Estimated binding specificities ?

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# IC=17.332 IC/col=1.083 n_of_columns=16 specificity:   
A |   0   0   0   0   0   0  24  11   0   0   0   9   0   0   0  11
C |   0   0   0   0   0   0  24   9   0   0   0   9   0   0   0   9
G |   0   0   0   0   0   0  24   9   0   0   0   9   0   0   0   9
T |  96  96  96  96  96  96  24  67  96  96  96  69  96  96  96  67
scan!

Dendrogram of similar interfaces ?

matrix format
  
  ------------------RG----------------------   L                   +-----------------------------6lui_A    
                                                                 +-1 
  ------------RTPTFT------------------------   L               +-2 +-----------------------------6s3h_A    
                                                               ! ! 
  ------------------------RT----------------                 +-3 +-----------------------------7k5y_U    
                                                             ! ! 
  ------------------------------RC----------               +-4 +-----------------------------7cow_T    
                                                           ! ! 
  --NASTHTNTLT------------------------------   L         +-5 +-----------------------------7fj2_B    
                                                         ! ! 
  QT----------------------------------------           +-6 +-----------------------------6m6b_M    
                                                       ! ! 
  --------------------TC--------------------         +-7 +-----------------------------4ass_H    
                                                     ! ! 
  ----------------------TTHTKG--------------   L   +-8 +-----------------------------7b0c_A    
                                                   ! ! 
  --------------------------------KTPTPGYTRG   L --9 +-----------------------------4mtd_D    
                                                   ! 
  ----------------------------SA------------   L   +-----------------------------6qec_A    
                                                 

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updated Tue Dec 19 10:54:53 2023