Estimated binding specificities ?

structure nameCRYSTAL STRUCTURE OF THE MITOCHONDRIAL DNA PACKAGING PROTEIN ABF2P IN COMPLEX WITH DNA AT 2.18 ANGSTROM RESOLUTION
(ARS-binding factor 2, mitochondrial)
referenceChakraborty et al. 'Nucleic 45 951 2017
sourceSaccharomyces cerevisiae (strain ATCC 204508 / S288c) / Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
experimentX-ray (resolution=2.18, R-factor=0.211)
structural superfamilyHMG-box;
sequence familyHMG high mobility group box;
multimeric complexes5jgh_ADGJ 5jh0_AD
redundant complexes5jgh_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
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# IC=12.632 IC/col=0.842 n_of_columns=15 specificity:   
A |  64   0  96   0  57  96   0  78  24  24  24  76  96   0  96
C |  12   0   0   0  12   0   0   6  24  24  24   6   0   0   0
G |  14   0   0   0  12   0   0   6  24  24  24   8   0   0   0
T |   6  96   0  96  15   0  96   6  24  24  24   6   0  96   0
scan!

Dendrogram of similar interfaces ?

matrix format
  
  HTRTTASTYAFALT----PTAT--STRA----FTIA--RT--QTLAMT   L                 +--------------5jh0_D    
                                                               +-------5 
  ------NAFTIA--RC----SGICST----------------------   L      +--8       +--------------1hry_A    
                                                            !  ! 
  --RT--NGFTIA--RA--NASG--ST----------------------   L   +-10  +----------------------1j47_A    
                                                         !  !  
  ----------------------------RTNGFTMA--RT--NTATSA   L   !  +-------------------------6t78_A    
                                                         !  
  --KC--NT--MAMA--EGSAAC--NT----------------------   L   !                           +2lef_A    
                                                         !            +--------------3 
  ----------------------------RCNTFTMA--RAHGNT--SA   L -12            !              +3f27_D    
                                                         !     +------6 
  ----------------------------RTNAFTIA--RA--NT--SA   L   !     !      !               +6edb_B    
                                                         !  +--9      +---------------1 
  ----------------------------RCNGFTMA--RTHTNG--ST   L   !  !  !                      +6t90_L    
                                                         !  !  ! 
  ----------------------------RCNTFTMA--RAHGNAACST   L   !  !  +----------------------4euw_A    
                                                         +-11  
  ----------------------------RTNAFA----RCDTNTRAST   L      !                 +-------6jrp_D    
                                                            !    +------------4 
  ----------------------------------FTCA----IG--AT          !    !            +-------6oem_H    
                                                            +----7 
  ------STYGLASGLA--TGTC--IT----------------------   L           !                    +3tq6_B    
                                                                 +--------------------2 
  --KA--STYGLASGLA--TGTC--IT----------------------   L                                +3tmm_A

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updated Tue Dec 19 10:47:21 2023