| structure name | HUMAN CORE-PIC IN THE INITIAL TRANSCRIBING STATE (GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2) |
| source | HOMO SAPIENS |
| experiment | NMR |
| structural superfamily | Rap30/74 interaction domains;"Winged helix" DNA-binding domain; |
| sequence family | Transcription initiation factor IIF, beta; |
| multimeric complexes | 5iy6_AMPTV 5iy7_ABEMNPTV 5iy8_ABEMNPTV 5iy9_ABEMNPTV 5iya_AMPT 5iyb_ABEMNPT 5iyc_ABEMNPT 5iyd_ABEMNPT 6o9l_7AMNPT 6o9l_ES 7lbm_AMOPTW 7lbm_BEQ 7nvr_7AEMORU 7nvs_AMORU 7nvs_BE 7nvt_AMORU 7nvu_ABEMORU 7nvy_7AMORU 7nvy_BE 7nvz_7AMORU 7nw0_7ABEMORU 7zwd_AMORUbc 7zwd_BE 7zx7_AMORUbc 7zx7_BE |
| redundant complexes | 5iy6 5iy9 6o9l 5iya 5iy7 5iyb 5iy8 5iyd |
| reference complex | 5iy6_T |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KIH |
Estimated binding specificities ?
| contact |  |
A | 11 24 9 0 0 24 24 24 24 24 24 24 24 9 C | 9 24 9 96 96 24 24 24 24 24 24 24 24 69 G | 67 24 67 0 0 24 24 24 24 24 24 24 24 9 T | 9 24 11 0 0 24 24 24 24 24 24 24 24 9scan! |
Dendrogram of similar interfaces ?
matrix formatKG----------------------ITHG L +--------------5iyc_T +-------5 --------------AT------------ ! +--------------5fyw_R ! --------------------YG------ ! +2heo_D +-----7 +-----------1 --------------------RCKT---- ! ! ! +2acj_B ! ! +------4 --------------------RG------ ! ! ! ! +-1qbj_C ! ! ! ! +-2 --------------RGRG---------- L +-8 +---6 +--------3 +-1cf7_A ! ! ! ! ----ETNT--SCRGHC------------ L ! ! ! +--4h0e_A ! ! ! ------SGQG--YCNC------------ +-9 ! +------------------2ve9_C ! ! ! --MG------TGQAAT--SARG------ L ! ! +----------------------------2p5l_D -10 ! ----FG----TTPTRTAT--LT------ L ! +----------------------------4hqe_A ! ----------STQASGATSTQT--QA-- L +----------------------------4on0_B |
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updated Mon Dec 18 13:02:04 2023