interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF REDUCED ABFR BOUND TO DNA
(MARR FAMILY TRANSCRIPTIONAL REGULATOR)
referenceG.LIU et al. J. AM. CHEM. SOC. V. 139 1598 2017
sourceSTAPHYLOCOCCUS EPIDERMIDIS
experimentX-ray (resolution=3.00, R-factor=0.226)
structural superfamily"Winged helix" DNA-binding domain;
sequence familyMarR family;
multimeric complexes5hlg_AC 5hlg_FH 5hlh_AC 5hlh_FH
redundant complexes5hlh_D
links to other resourcesPDBSum NPIDB BIPA PDIdb DNAproDB
protein sequence
interface signatureSNTTPR

Estimated binding specificities ?

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# IC=8.247 IC/col=0.916 n_of_columns=9 specificity:   
A |  12   0   0  96   0  12  24  96   0
C |  12  96   0   0  12  12  24   0   0
G |  60   0  96   0   0  12  24   0  96
T |  12   0   0   0  84  60  24   0   0
scan!

Dendrogram of similar interfaces ?

matrix format

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updated Fri Apr 1 09:51:25 2022