interface graph thumbnail
legend  pdf

structure nameHUMAN APE1 PRODUCT COMPLEX
(DNA-apurinic or apyrimidinic site lyase)
referenceFreudenthal et al. Nat.Struct.Mol.Biol. 22 924 2015
sourceHomo sapiens
experimentX-ray (resolution=1.57, R-factor=0.187)
structural superfamilyDNase I-like;
sequence familyEndonuclease/Exonuclease/phosphatase fa;
redundant complexes1de8_B 1dew_B 4iem_C 5dfh_A 5dfi_A 5dfj_A 5dg0_A 5wn0_A 5wn1_A 5wn2_A 5wn3_B 5wn4_B 5wn5_B 6boq_A 6bor_A 6bos_A 6bot_A 6bou_A 6bov_A 6bow_A 6p93_A 6p94_A 6w0q_A 6w2p_A 6w3l_B 6w3n_B 6w3q_B 6w3u_B 6w43_A 6w4i_B 6w4t_B 7lpg_D 7lph_D 7lpi_D 7lpj_D 7suv_B 7svb_B 7tr7_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  --KGYGRG--NC--YGMG                               +---5dff_A    
                                                   ! 
  ------SCNTNG--NGRG       +-----------------------3    +4b5f_A    
                           !                       !  +-1 
  ----YT--------YCRC       !                       +--2 +6fk5_A    
                         --4                          ! 
  ------------YCRG--       !                          +2voa_B    
                           ! 
  HAQA--------------       +---------------------------4pei_D    
                         

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updated Tue Dec 19 10:15:01 2023