5d39_BD : 3D-footprint complex

structure name	TRANSCRIPTION FACTOR-DNA COMPLEX
reference	Ouyang et al. Proc.Natl.Acad.Sci.USA 113 13015 2016
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	p53-like transcription factors;SH2 domain;STAT;
reference complex	4y5w_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 5d39_B interface=132,247,248,250,251, qeelkfktglrrlqhrvgeihllrealamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggelepktrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrfpakpplvradmvtekqarelestgeiinntvplensipgnccsalfknlllkkikrcegtesvteekcavlfsasftlgpgklpiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirgqdgspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve > 5d39_D interface=136,250,251,253,254, qeelkfktglrrlqhrvgeihllrealqealamllqettgeleaakalvlkriqiwkrqqqlagngapfeeslaplqerceslvdiysqlqqevgaaggelepktrasltgrldevlrtlvtscflvekqppqvlKtqtkfqagvrfllglrfpakpplvradmvtekqarelestgeiinntvplensipgnccsalfknlllkkikrcetesvteekcavlfsasftlgpgklpiqlqalslplvviVHgNQdnnakatilwdnafsemdrvpfvvaervpwekmcetlnlkfmaevgtnrgllpehflflaqkifndnslsmeafqhrsvswsqfnkeillgrgftfwqwfdgvldltkrclrsywsdrliigfiskqyvtslllnepdgtfllrfsdseiggitiahvirgqdgspqieniqpfsakdlsirslgdrirdlaqlknlypkkpkdeafrshykpeqmgkdgrgvpatikmtve
interface signature	KVHNQ/KVHNQ

Estimated binding specificities ?

readout + contact

# IC=3.115 IC/col=0.346 n_of_columns=9

specificity:

A |   9  12  15   8  20   7  12  63  63
C |   9  12  51  70  20   7  12  13  10
G |   9  12  15  10  22  75  60  10  10
T |  69  60  15   8  34   7  12  10  13

scan!

home
updated Sat Dec 16 00:23:43 2023