structure name | CRYSTAL STRUCTURE OF THE DROSOPHILA ZESTE DNA BINDING DOMAIN IN COMPLEX WITH DNA (Regulatory protein zeste) |
reference | Gao et al. J.Mol.Biol. 427 3824 2015 |
source | Drosophila melanogaster |
experiment | X-ray (resolution=3.10, R-factor=0.224) |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | RKLNLR |
Estimated binding specificities ?
readout + contact |
A | 9 6 96 12 19 C | 67 6 0 12 19 G | 11 78 0 60 20 T | 9 6 0 12 38scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: ZESTE | ||
CGAGT | PubMed | 5cqq_A(2.57e-08) |
GAGTG | PubMed | 5cqq_A(1.35e-04) |
Dendrogram of similar interfaces ?
matrix formatRA----------YAQTNAAARG L +-----------------------------6wig_A +-1 ------RGKGSGSAQAVC---- L +-2 +-----------------------------5no6_N ! ! --RC------------------ +-3 +-----------------------------6l9z_S ! ! RT--------FTYAQTNAATRG L --4 +-----------------------------6ryd_F ! ----NT---------------- +-----------------------------7tve_F |
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updated Tue Dec 19 10:11:52 2023