interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF MCM2-7 DOUBLE HEXAMER ON DSDNA
(DNA REPLICATION LICENSING FACTOR MCM5)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyNucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
sequence familyMCM2/3/5 family; ATPase family associated with various cellul;
multimeric complexes5bk4_234567ABCDEF 5u8s_25 5u8s_3467 6f0l_234567ABCDEF 6rqc_234567ABCDE 6sko_234567 7p30_234567ABCDEF 7qhs_234567
redundant complexes6sko_5 5u8s 6f0l 6rqc 7p30 7qhs
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ----------------------------------RT------                   +-----------------------------6u0m_5    
                                                             +-1 
  ----------------------------------RT------               +-2 +-----------------------------6u0m_6    
                                                           ! ! 
  ----------------------------------KT--RT--             +-3 +-----------------------------6raw_5    
                                                         ! ! 
  ------------------------------------DA----           +-4 +-----------------------------6u0m_3    
                                                       ! ! 
  ----------------------------------KT----WT         +-5 +-----------------------------6u0m_2    
                                                     ! ! 
  ----------------------------------KA------       +-6 +-----------------------------5v8f_2    
                                                   ! ! 
  RTETKTRT--MTRTFT------------RT------------   L --7 +-----------------------------4pog_H    
                                                   ! 
  --------RC----FCRCRCECRCQCRCVCVCRC--------   L   +-----------------------------3a5u_B    
                                                 

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updated Tue Dec 19 10:02:13 2023