interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF HUMAN NUCLEOSOME CONTAINING H3.Y
(H3.Y)
referenceKurumizaka et al. 'Nucleic 44 6127 2016
sourceHOMO SAPIENS
experimentX-ray (resolution=2.80, R-factor=0.203)
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes5ay8_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  HTRGYG----RT                 +-----------------------------8siy_G    
                             +-1 
  --RG----LC--             +-2 +-----------------------------8bvw_e    
                           ! ! 
  --RT----LGRA   L       +-3 +-----------------------------8he5_a    
                         ! ! 
  HARA----LTRC         +-4 +-----------------------------3kwq_E    
                       ! ! 
  --RG------RT       +-5 +-----------------------------8cww_A    
                     ! ! 
  --RT------RG     --6 +-----------------------------7uv9_E    
                     ! 
  ------RG----       +-----------------------------7k6p_D    
                   

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updated Tue Dec 19 09:55:16 2023